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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctggactcttttatcattttcttctcttacagtcggtagggtgtttttgaggctttttattatgcagcttaatcttatattttcatttttagtttttctggtgataaagggttttaatatgctgatgttcacttgccagGAATTTCTGCGAAATCCAGACAGATATGTAAGGCTTGGTGCTCGGCCACCTCGTGGTGTTCTCTTG

Basic information

species Glycine max
transcript GLYMA0028S00210.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321724|gb|GR825041.1|GR825041
EST:     CTGACATTGCTGGTGTTGATGAAGCTAAAGAGGAGTTAGAAGAGATTGTG                         GAATTTCTGCGAAATCCAGACAGATATGTAAGGCTTGGTGCTCGGCCACCT
genomic: CTGACATTGCTGGTGTTGATGAAGCTAAAGAGGAGTTAGAAGAGATTGTGgtaagctgga ... cacttgccagGAATTTCTGCGAAATCCAGACAGATATGTAAGGCTTGGTGCTCGGCCACCT
EST: gi|16276875|gb|BI942089.1|BI942089
EST:     CTGACATTGCTGGTGTTGATGAAGCTAAAGAGGAGTTAGAAGAGATTGTG                         GAATTTCTGCGAAATCCAGACAGATATGTAAGGCTTGGTGCTCGGCCACCT
genomic: CTGACATTGCTGGTGTTGATGAAGCTAAAGAGGAGTTAGAAGAGATTGTGgtaagctgga ... cacttgccagGAATTTCTGCGAAATCCAGACAGATATGTAAGGCTTGGTGCTCGGCCACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttagtttttctggtgataaagggttttaatatgctgatgttcacttgccagGAATTTCTGCGAAATCCAGACAGATATGTAAGGCTTGGTGCTCGGCCACCTCGTGGTGTTCTCTTG
                                   tgctgat  putative branch site (score: 3)
                                           ttcactt  CT-rich tract
                           ttttaatat  TA-rich tract