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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAGgtgtgagtttgcattcttgctccatcttaattccttggaccttcttatacaacgtatgtttcccgcagctttaaaatgatgcatttttcttaataattgtatgctgtgtgcag

Basic information

species Glycine max
transcript GLYMA0028S00210.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0028S00210.2 (Glycine max), 5'ss of exon 2
lower sequence: AT5G58870.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAGgtgtgagtttgcattcttgctccatcttaattccttggaccttcttatacaacgtatgtttcccgcagctttaaaatgatgcatttttcttaataattgtatgctgtgtgcag
||||   |||| ||   ||| |||||||||||||||||||| ||||| ||||| | |||||| |||||      ||||||  |      | | ||||    |||      || |  ||  || |         ||  |       |||| ||||||||| |  |||  | | |   |||
ATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAGgt------ttgcatattcatgataccgtaat---gtgg------ttgtttaagttaag---------gccatg------tgcacttttcttaaaagctgtgaggtatacacag

upper sequence: GLYMA0028S00210.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g06120.t01 (Vitis vinifera), 5'ss of exon 2
ATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAGgtgtgagtttgcattcttgctccatcttaattccttggaccttcttatacaacgtatgtttcccgcagctttaaaatgatgcatttttcttaataattgtatgctgtgtgcag
|| || ||||| |||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||||||  |  |  |  |   | ||| |     ||||| | ||    || |    ||  || |  | |  | | |     || ||   |    | |                  
ATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCTGTAAGCTTTTCTCAGgtgtgtatgagtgtgttgctttcattta----ccttgaaact---aatgc----taatttgcaaggaattctgagtgagtgaatgcctacctacacag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321724|gb|GR825041.1|GR825041
EST:     CTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAG                         CATACGGCTGGTCAGATATGGAACCGCAAATCAGGCCCTTCTGCTGGTACA
genomic: CTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAGgtgtgagttt ... ctgtgtgcagCATACGGCTGGTCAGATATGGAACCGCAAATCAGGCCCTTCTGCTGGTACA
EST: gi|16276875|gb|BI942089.1|BI942089
EST:     GCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCA-                         CATACGGCTGGTCAGATATGGAACCGCAAATCAGGCCCTTCTGCTGGTACA
genomic: GCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAGgtgtgagttt ... ctgtgtgcagCATACGGCTGGTCAGATATGGAACCGCAAATCAGGCCCTTCTGCTGGTACA