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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcctgctgtcctagctgctggtaggatcggaccacccgcttgtccacttaatgactcttttgctgccgcgccctttgcctctcgctctccgcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGCGCCGTAGCAGCCCTCTCGAGGATGGGGAAGAGAAGAGAATATTACATTA

Basic information

species Chlamydomonas reinhardtii
transcript EDP07832
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10770221|gb|AV621046.1|AV621046
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|34988219|gb|CF562136.1|CF562136
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|34983887|gb|CF557804.1|CF557804
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAA
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAA
EST: gi|6544452|gb|AV390236.1|AV390236
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGATGG                         GTTCCACGTGAAGAAGT-CTAATTAATTGTTAGT-CCCAGAGCCAAGGG-C
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|9210577|gb|BE337492.1|BE337492
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|34983402|gb|CF557319.1|CF557319
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|6542325|gb|AV388109.1|AV388109
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|10775408|gb|AV632088.1|AV632088
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGA
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGA
EST: gi|14227393|gb|BG846209.1|BG846209
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|6550086|gb|AV395870.1|AV395870
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|34981554|gb|CF555471.1|CF555471
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|6542250|gb|AV388034.1|AV388034
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGA
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGA
EST: gi|34984454|gb|CF558371.1|CF558371
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|6543177|gb|AV388961.1|AV388961
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|7687682|gb|AW758328.1|AW758328
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAG-ACTAATTAATTGTTAGTACCCAG
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAG
EST: gi|15373105|gb|BI532531.1|BI532531
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|16071337|gb|BI873333.1|BI873333
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|10769520|gb|AV620345.1|AV620345
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|9460535|gb|BE453283.1|BE453283
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGA-CAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAA
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAA
EST: gi|6545492|gb|AV391276.1|AV391276
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GT-CCACGTGAAGAAGT-CTAATTACTTGTTAGTACC-AGAG
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAG
EST: gi|34990184|gb|CF564101.1|CF564101
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTN-TACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|34993452|gb|CF567369.1|CF567369
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|10779484|gb|AV636164.1|AV636164
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|34983886|gb|CF557803.1|CF557803
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|49460916|gb|BP088829.1|BP088829
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|34983885|gb|CF557802.1|CF557802
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|7687656|gb|AW758302.1|AW758302
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAA
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAA
EST: gi|34994529|gb|CF568446.1|CF568446
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|34990183|gb|CF564100.1|CF564100
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|49468500|gb|BP096361.1|BP096361
EST:     CAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: CAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|14226530|gb|BG845362.1|BG845362
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|10773872|gb|AV624695.1|AV624695
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|34983401|gb|CF557318.1|CF557318
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|6540822|gb|AV386606.1|AV386606
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTT
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTT
EST: gi|7686910|gb|AW757558.1|AW757558
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|22065676|gb|BQ816492.1|BQ816492
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|6541933|gb|AV387717.1|AV387717
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTA-TTGTTAGTACC-AGAGCCAAGGG-C
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|10778098|gb|AV634778.1|AV634778
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|23364664|gb|BU652484.1|BU652484
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|34985475|gb|CF559392.1|CF559392
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|6541751|gb|AV387535.1|AV387535
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         G-TCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
EST: gi|6545112|gb|AV390896.1|AV390896
EST:     TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGG                         GTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC
genomic: TGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAGGGgtgagcgcat ... gcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttaatgactcttttgctgccgcgccctttgcctctcgctctccgcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGCGCCGTAGCAGCCCTCTCGAGGATGGGGAAGAGAAGAGAATATTACATTA
 acttaat  putative branch site (score: 4)
                         ccctttgcctctcgct  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcctgctgtcctagctgctggtaggatcggaccacccgcttgtccacttaatgactcttttgctgccgcgccctttgcctctcgctctccgcctgcacagGTTCCACGTGAAGAAGTACTAATTAATTGTTAGTACCCAGAGCCAAGGGGCGCCGTAGCAGCCCTCTCGAGGATGGGGAAGAGAAGAGAATATTACATTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - cacccgc
- - - - - - - - - - - - - - - - - - - - - -ccactta