Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcagggctgggggctactgcaagagagcactcgagggagagttgaggttgtgtttgtcatgggtgacggtatgtacatcagcccgtgcgtgtatgc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07832
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10770221|gb|AV621046.1|AV621046
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|34988219|gb|CF562136.1|CF562136
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|34983887|gb|CF557804.1|CF557804
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|6544452|gb|AV390236.1|AV390236
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAT
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10776191|gb|AV632871.1|AV632871
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTG
EST: gi|9210577|gb|BE337492.1|BE337492
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|34983402|gb|CF557319.1|CF557319
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|6545401|gb|AV391185.1|AV391185
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGC
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGC
EST: gi|6542325|gb|AV388109.1|AV388109
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10775408|gb|AV632088.1|AV632088
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|22053350|gb|BQ810711.1|BQ810711
EST:     GAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGA
genomic: GAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGG-CGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGA
EST: gi|14227393|gb|BG846209.1|BG846209
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|34981554|gb|CF555471.1|CF555471
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|6542250|gb|AV388034.1|AV388034
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10778536|gb|AV635216.1|AV635216
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCG
EST: gi|7687273|gb|AW757921.1|AW757921
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGC
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGC
EST: gi|34984454|gb|CF558371.1|CF558371
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|6543177|gb|AV388961.1|AV388961
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10778669|gb|AV635349.1|AV635349
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|7687738|gb|AW758384.1|AW758384
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCG
EST: gi|10780076|gb|AV636756.1|AV636756
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|49460090|gb|BP088003.1|BP088003
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGT
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGT
EST: gi|7687682|gb|AW758328.1|AW758328
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10779455|gb|AV636135.1|AV636135
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCG
EST: gi|15373105|gb|BI532531.1|BI532531
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|16071337|gb|BI873333.1|BI873333
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10769520|gb|AV620345.1|AV620345
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10780112|gb|AV636792.1|AV636792
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGA
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGA
EST: gi|9460535|gb|BE453283.1|BE453283
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGA-CAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|6545492|gb|AV391276.1|AV391276
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10781631|gb|AV638311.1|AV638311
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCC
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCC
EST: gi|34990184|gb|CF564101.1|CF564101
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|34993452|gb|CF567369.1|CF567369
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10779484|gb|AV636164.1|AV636164
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10776764|gb|AV633444.1|AV633444
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTG
EST: gi|10777454|gb|AV634134.1|AV634134
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|22062413|gb|BQ814801.1|BQ814801
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTG
EST: gi|34983886|gb|CF557803.1|CF557803
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|49460916|gb|BP088829.1|BP088829
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10776194|gb|AV632874.1|AV632874
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGNACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTC
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTC
EST: gi|34983885|gb|CF557802.1|CF557802
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|7687656|gb|AW758302.1|AW758302
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|34994529|gb|CF568446.1|CF568446
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|34990183|gb|CF564100.1|CF564100
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10779904|gb|AV636584.1|AV636584
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCC
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCC
EST: gi|10775570|gb|AV632250.1|AV632250
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|14226530|gb|BG845362.1|BG845362
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10773872|gb|AV624695.1|AV624695
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|34983401|gb|CF557318.1|CF557318
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|6540822|gb|AV386606.1|AV386606
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|7686910|gb|AW757558.1|AW757558
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|22065676|gb|BQ816492.1|BQ816492
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|6541933|gb|AV387717.1|AV387717
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10778098|gb|AV634778.1|AV634778
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|23364664|gb|BU652484.1|BU652484
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|34985475|gb|CF559392.1|CF559392
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
EST: gi|10770457|gb|AV621282.1|AV621282
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGA
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGA
EST: gi|6545112|gb|AV390896.1|AV390896
EST:     TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG                         GGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG
genomic: TGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcaggg ... caacccacagGGCTGGAAGGGCGGTGTGCACAGCTCTGAGAACAAGCGTGACGCCCGCGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCGgtaagcagggctgggggctactgcaagagagcactcgagggagagttgaggttgtgtttgtcatgggtgacggtatgtacatcagcccgtgcgtgtatgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgt