Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cactcgtgctcctggccgtcacaaacctcccgactctcatttccgcacactgcctcactgccgcccacctcctccgcccctccttcccccctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP07832
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10770221|gb|AV621046.1|AV621046
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10776753|gb|AV633433.1|AV633433
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|34988219|gb|CF562136.1|CF562136
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|34983887|gb|CF557804.1|CF557804
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10779248|gb|AV635928.1|AV635928
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|6544452|gb|AV390236.1|AV390236
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10776191|gb|AV632871.1|AV632871
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|6542059|gb|AV387843.1|AV387843
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10780118|gb|AV636798.1|AV636798
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|9210577|gb|BE337492.1|BE337492
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|34983402|gb|CF557319.1|CF557319
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|6545401|gb|AV391185.1|AV391185
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTAGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|6542325|gb|AV388109.1|AV388109
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10780838|gb|AV637518.1|AV637518
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|34990185|gb|CF564102.1|CF564102
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10775408|gb|AV632088.1|AV632088
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10780031|gb|AV636711.1|AV636711
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|14227393|gb|BG846209.1|BG846209
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|34981554|gb|CF555471.1|CF555471
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|6542250|gb|AV388034.1|AV388034
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10772439|gb|AV623262.1|AV623262
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCG
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCG
EST: gi|10778536|gb|AV635216.1|AV635216
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10781048|gb|AV637728.1|AV637728
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|7687273|gb|AW757921.1|AW757921
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|6543177|gb|AV388961.1|AV388961
EST:     CATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10778669|gb|AV635349.1|AV635349
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|7687738|gb|AW758384.1|AW758384
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10780076|gb|AV636756.1|AV636756
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|49460090|gb|BP088003.1|BP088003
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|49460266|gb|BP088179.1|BP088179
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|49462057|gb|BP089970.1|BP089970
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGA
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGA
EST: gi|7687682|gb|AW758328.1|AW758328
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10779455|gb|AV636135.1|AV636135
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|15373105|gb|BI532531.1|BI532531
EST:     GCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: GCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|16071337|gb|BI873333.1|BI873333
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10769520|gb|AV620345.1|AV620345
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10780112|gb|AV636792.1|AV636792
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10782108|gb|AV638788.1|AV638788
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|9460535|gb|BE453283.1|BE453283
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|6545492|gb|AV391276.1|AV391276
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10776977|gb|AV633657.1|AV633657
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10781631|gb|AV638311.1|AV638311
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|34990184|gb|CF564101.1|CF564101
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|34993452|gb|CF567369.1|CF567369
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10779484|gb|AV636164.1|AV636164
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10776764|gb|AV633444.1|AV633444
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10779084|gb|AV635764.1|AV635764
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|6547382|gb|AV393166.1|AV393166
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGC
EST: gi|10777454|gb|AV634134.1|AV634134
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|22062413|gb|BQ814801.1|BQ814801
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|34983886|gb|CF557803.1|CF557803
EST:     ACTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|49460916|gb|BP088829.1|BP088829
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10776194|gb|AV632874.1|AV632874
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|34983885|gb|CF557802.1|CF557802
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|7687656|gb|AW758302.1|AW758302
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|34994529|gb|CF568446.1|CF568446
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|34990183|gb|CF564100.1|CF564100
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10779904|gb|AV636584.1|AV636584
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10775570|gb|AV632250.1|AV632250
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|14226530|gb|BG845362.1|BG845362
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10773872|gb|AV624695.1|AV624695
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10793390|gb|AV630756.1|AV630756
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAG
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAG
EST: gi|34983401|gb|CF557318.1|CF557318
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|6540822|gb|AV386606.1|AV386606
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10782810|gb|AV639482.1|AV639482
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|7686910|gb|AW757558.1|AW757558
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|22065676|gb|BQ816492.1|BQ816492
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|6541933|gb|AV387717.1|AV387717
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|49458445|gb|BP086358.1|BP086358
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGGCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGT
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGT
EST: gi|10780980|gb|AV637660.1|AV637660
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10778098|gb|AV634778.1|AV634778
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10776039|gb|AV632719.1|AV632719
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10779162|gb|AV635842.1|AV635842
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|49462415|gb|BP090328.1|BP090328
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGNCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCG
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCG
EST: gi|34985475|gb|CF559392.1|CF559392
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|10770457|gb|AV621282.1|AV621282
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGC
EST: gi|49459455|gb|BP087368.1|BP087368
EST:     CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGG                         GCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTAGAG
genomic: CCTGCCGCCCAGCTCATCCATCGAGGCCGCCAACCAGGAGGGCGCCGCGGgtgagtcgcc ... ctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCT-GAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacactgcctcactgccgcccacctcctccgcccctccttcccccctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG
      gcctcac  putative branch site (score: 3)
            ctgccgcccacctcct  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cactcgtgctcctggccgtcacaaacctcccgactctcatttccgcacactgcctcactgccgcccacctcctccgcccctccttcccccctccccgcagGCTACGTGGAGGACGCCGTCAAGGGCGTTGTGTCGGGACTGGTGTCTGAGCCGTCCGGCACCGAGCCCGGCGCCTGGACCGGCGCCGCG

- - - - - - - - - - acaaacc
- - - - - - - - - - - - - - - - actctca
- - - - - - - - - - - - - - - - - - - - - ccgcaca