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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgcgggtcgcctcaccgacagcgttacatgaacgttacgcagcgtcccggtgacctttcggctttcggtgctatgcgagcaacagcgcgaatg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07832
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10770221|gb|AV621046.1|AV621046
EST:     CTTATGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10776753|gb|AV633433.1|AV633433
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|34988219|gb|CF562136.1|CF562136
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|34983887|gb|CF557804.1|CF557804
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10779248|gb|AV635928.1|AV635928
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|6544452|gb|AV390236.1|AV390236
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10776191|gb|AV632871.1|AV632871
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|6542788|gb|AV388572.1|AV388572
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCA
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCA
EST: gi|6542059|gb|AV387843.1|AV387843
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10780118|gb|AV636798.1|AV636798
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|9210577|gb|BE337492.1|BE337492
EST:     GATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: GATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|34983402|gb|CF557319.1|CF557319
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|6544244|gb|AV390028.1|AV390028
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|6545401|gb|AV391185.1|AV391185
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTNNCTCCGTGCCGCATCAGCCACCACGAGGGCCCCTCCCGG
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTT--CTCCG-GCCGCATCAGCCACCACGAGGGCCCCTCCCGG
EST: gi|6542325|gb|AV388109.1|AV388109
EST:     CAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10780838|gb|AV637518.1|AV637518
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|34990185|gb|CF564102.1|CF564102
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10775408|gb|AV632088.1|AV632088
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10780031|gb|AV636711.1|AV636711
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|14227393|gb|BG846209.1|BG846209
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|49460421|gb|BP088334.1|BP088334
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCG
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCG
EST: gi|34981554|gb|CF555471.1|CF555471
EST:     TTTTGTGGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: TTTTGT-GCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|49459880|gb|BP087793.1|BP087793
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|6542250|gb|AV388034.1|AV388034
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10772439|gb|AV623262.1|AV623262
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10778536|gb|AV635216.1|AV635216
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10781048|gb|AV637728.1|AV637728
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|7687273|gb|AW757921.1|AW757921
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10778669|gb|AV635349.1|AV635349
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|7687738|gb|AW758384.1|AW758384
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|34988220|gb|CF562137.1|CF562137
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCC
EST: gi|10780076|gb|AV636756.1|AV636756
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|49460090|gb|BP088003.1|BP088003
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|49460266|gb|BP088179.1|BP088179
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|49462057|gb|BP089970.1|BP089970
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|7687682|gb|AW758328.1|AW758328
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10779455|gb|AV636135.1|AV636135
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|49460483|gb|BP088396.1|BP088396
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|16071337|gb|BI873333.1|BI873333
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10780112|gb|AV636792.1|AV636792
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10782108|gb|AV638788.1|AV638788
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|9460535|gb|BE453283.1|BE453283
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|6545492|gb|AV391276.1|AV391276
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10776977|gb|AV633657.1|AV633657
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10781631|gb|AV638311.1|AV638311
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|34990184|gb|CF564101.1|CF564101
EST:     CTTTTGTGCGTATCTTCAGTCCAGATGATACCAAGGTCAAGAANTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|49462074|gb|BP089987.1|BP089987
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|49461313|gb|BP089226.1|BP089226
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|34993452|gb|CF567369.1|CF567369
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10779484|gb|AV636164.1|AV636164
EST:     GCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: GCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10776764|gb|AV633444.1|AV633444
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|6544035|gb|AV389819.1|AV389819
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10779084|gb|AV635764.1|AV635764
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|6547382|gb|AV393166.1|AV393166
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10777454|gb|AV634134.1|AV634134
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|22062413|gb|BQ814801.1|BQ814801
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|34983886|gb|CF557803.1|CF557803
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|49460916|gb|BP088829.1|BP088829
EST:     CTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10776194|gb|AV632874.1|AV632874
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|34983885|gb|CF557802.1|CF557802
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|7687656|gb|AW758302.1|AW758302
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|34994529|gb|CF568446.1|CF568446
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAGCTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10779904|gb|AV636584.1|AV636584
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10775570|gb|AV632250.1|AV632250
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|49459186|gb|BP087099.1|BP087099
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|14226530|gb|BG845362.1|BG845362
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10773872|gb|AV624695.1|AV624695
EST:     ACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: ACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10793390|gb|AV630756.1|AV630756
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|34983401|gb|CF557318.1|CF557318
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|6540822|gb|AV386606.1|AV386606
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10793954|gb|AV631320.1|AV631320
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTC
EST: gi|10782810|gb|AV639482.1|AV639482
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|7686910|gb|AW757558.1|AW757558
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|22065676|gb|BQ816492.1|BQ816492
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|6541933|gb|AV387717.1|AV387717
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|49458445|gb|BP086358.1|BP086358
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCATCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10780980|gb|AV637660.1|AV637660
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10778098|gb|AV634778.1|AV634778
EST:     CTTTGGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10776039|gb|AV632719.1|AV632719
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10779162|gb|AV635842.1|AV635842
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|49462415|gb|BP090328.1|BP090328
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|34985475|gb|CF559392.1|CF559392
EST:     CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
EST: gi|10770457|gb|AV621282.1|AV621282
EST:     CTTTGGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG                         GTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC
genomic: CTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgc ... ccgcctacagGTGAACAACTTCTCCGGCCGCATCAGCCACCACGAGGGCCCCTCCCGGCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCGgtgcgtgtgcgggtcgcctcaccgacagcgttacatgaacgttacgcagcgtcccggtgacctttcggctttcggtgctatgcgagcaacagcgcgaatg

- - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacagc