Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctactgtaattgtgcgcggtccgctcttgtcgtcttccggaactgaccctggccactttcgctgacgggactttcttcttccctcctggccttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP07832
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10770221|gb|AV621046.1|AV621046
EST:     GAGGCGACAAACT                         GGTTCGGCCAGGCTTATGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: GAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10776753|gb|AV633433.1|AV633433
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|34988219|gb|CF562136.1|CF562136
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|34983887|gb|CF557804.1|CF557804
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10779248|gb|AV635928.1|AV635928
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|6544452|gb|AV390236.1|AV390236
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10776191|gb|AV632871.1|AV632871
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|6542788|gb|AV388572.1|AV388572
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|6542059|gb|AV387843.1|AV387843
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10780118|gb|AV636798.1|AV636798
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|34983402|gb|CF557319.1|CF557319
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|6544244|gb|AV390028.1|AV390028
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|6545401|gb|AV391185.1|AV391185
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10780838|gb|AV637518.1|AV637518
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|34990185|gb|CF564102.1|CF564102
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10775408|gb|AV632088.1|AV632088
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10780031|gb|AV636711.1|AV636711
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|14227393|gb|BG846209.1|BG846209
EST:     GCTTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: GC-TACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|49460421|gb|BP088334.1|BP088334
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|49459880|gb|BP087793.1|BP087793
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|6542250|gb|AV388034.1|AV388034
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10772439|gb|AV623262.1|AV623262
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10778536|gb|AV635216.1|AV635216
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10781048|gb|AV637728.1|AV637728
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|7687273|gb|AW757921.1|AW757921
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10778669|gb|AV635349.1|AV635349
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|7687738|gb|AW758384.1|AW758384
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|34988220|gb|CF562137.1|CF562137
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10780076|gb|AV636756.1|AV636756
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|49460090|gb|BP088003.1|BP088003
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|49460266|gb|BP088179.1|BP088179
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|49462057|gb|BP089970.1|BP089970
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|7687682|gb|AW758328.1|AW758328
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10779455|gb|AV636135.1|AV636135
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|49460483|gb|BP088396.1|BP088396
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|16071337|gb|BI873333.1|BI873333
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10780112|gb|AV636792.1|AV636792
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10782108|gb|AV638788.1|AV638788
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|9460535|gb|BE453283.1|BE453283
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|6545492|gb|AV391276.1|AV391276
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10776977|gb|AV633657.1|AV633657
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10781631|gb|AV638311.1|AV638311
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|34990184|gb|CF564101.1|CF564101
EST:     CAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGTCCAGATGATACCAAGGTCA
genomic: CAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|49462074|gb|BP089987.1|BP089987
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|49461313|gb|BP089226.1|BP089226
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|34993452|gb|CF567369.1|CF567369
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10776764|gb|AV633444.1|AV633444
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|6544035|gb|AV389819.1|AV389819
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10779084|gb|AV635764.1|AV635764
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|6547382|gb|AV393166.1|AV393166
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10777454|gb|AV634134.1|AV634134
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|22062413|gb|BQ814801.1|BQ814801
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|34983886|gb|CF557803.1|CF557803
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10776194|gb|AV632874.1|AV632874
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|34983885|gb|CF557802.1|CF557802
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|7687656|gb|AW758302.1|AW758302
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|34994529|gb|CF568446.1|CF568446
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAGCT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10779904|gb|AV636584.1|AV636584
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10775570|gb|AV632250.1|AV632250
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|49459186|gb|BP087099.1|BP087099
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|14226530|gb|BG845362.1|BG845362
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTNCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTC
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTT-CGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTC
EST: gi|10793390|gb|AV630756.1|AV630756
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|34983401|gb|CF557318.1|CF557318
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|6540822|gb|AV386606.1|AV386606
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10793954|gb|AV631320.1|AV631320
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10782810|gb|AV639482.1|AV639482
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|7686910|gb|AW757558.1|AW757558
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|22065676|gb|BQ816492.1|BQ816492
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|6541933|gb|AV387717.1|AV387717
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|49458445|gb|BP086358.1|BP086358
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10780980|gb|AV637660.1|AV637660
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10776039|gb|AV632719.1|AV632719
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10779162|gb|AV635842.1|AV635842
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|49462415|gb|BP090328.1|BP090328
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|34985475|gb|CF559392.1|CF559392
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
EST: gi|10770457|gb|AV621282.1|AV621282
EST:     CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACT                         GGTTCGGCCAGGCTTTGGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA
genomic: CGCTACCACCGTTGCCGTCAAGGCCCTGTCACTGCAGGAGGCGACAAACTgtgagcttcc ... cttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accctggccactttcgctgacgggactttcttcttccctcctggccttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG
                         ctttcttcttccctcc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctactgtaattgtgcgcggtccgctcttgtcgtcttccggaactgaccctggccactttcgctgacgggactttcttcttccctcctggccttcgcgcagGGTTCGGCCAGGCTTTTGTGCGTATCTTCAGCCCAGATGATACCAAGGTCAAGAACTACCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - -ttgtgcg
- - - - - - - - - - - - - - - - - - - - aactgac