1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggggcgcggcgccagcgctcggcatcgatgtgtgactaggatgcggcaatgacagcagttgagcttattttgtatcccttgcacttgacccgcatcgcagATACGTTGAGAGGGCGAGGAGCTAGCAGCGGCAACCTGGGCGCCTCAGGCTCAGGCGGCGCCGGCGGCGCGGGGCCAAGTGGCGGTGGCGGTGCCGGTAC
species | Chlamydomonas reinhardtii |
transcript | EDP06524 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTCGGCGAGTGGCTGTGCCTGCGGCGAGAGATGCAGGAGATCCCGCTAA ATACGTTGAGAGGGCGAGGAGCTAGCAGCGGCAACCTGGGCGCCTCAGGCTEST: gi|23366738|gb|BU654557.1|BU654557
genomic: GTTCGGCGAGTGGCTGTGCCTGCGGCGAGAGATGCAGGAGATCCCGCTAAgtgagtatgg ... cgcatcgcagATACGTTGAGAGGGCGAGGAGCTAGCAGCGGCAACCTGGGCGCCTCAGGCT
EST: GTTCGGCGAGTGGCTGTGCCTGCGGCGAGAGATGCAGGAGATCCCGCTAA ATACGTTGAGAGGGCGAGGAGCTAGCAGCGGCAACCTGGGCGCCTCAAGCTEST: gi|23366737|gb|BU654556.1|BU654556
genomic: GTTCGGCGAGTGGCTGTGCCTGCGGCGAGAGATGCAGGAGATCCCGCTAAgtgagtatgg ... cgcatcgcagATACGTTGAGAGGGCGAGGAGCTAGCAGCGGCAACCTGGGCGCCTCAGGCT
EST: GTTCGGCGAGTGGCTGTGCCTGCGGCGAGAGATGCAGGAGATCCCGCTAA ATACGTTGAGAGGGCGAGGAGCTAGCAGCGGCAACCTGGGCGCCTCAGGCT
genomic: GTTCGGCGAGTGGCTGTGCCTGCGGCGAGAGATGCAGGAGATCCCGCTAAgtgagtatgg ... cgcatcgcagATACGTTGAGAGGGCGAGGAGCTAGCAGCGGCAACCTGGGCGCCTCAGGCT
gcaatgacagcagttgagcttattttgtatcccttgcacttgacccgcatcgcagATACGTTGAGAGGGCGAGGAGCTAGCAGCGGCAACCTGGGCGCCTCAGGCTCAGGCGGCGCCGGCGGCGCGGGGCCAAGTGGCGGTGGCGGTGCCGGTAC
acttgac putative branch site (score: 4)
ttattttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggcgcggcgccagcgctcggcatcgatgtgtgactaggatgcggcaatgacagcagttgagcttattttgtatcccttgcacttgacccgcatcgcagATACGTTGAGAGGGCGAGGAGCTAGCAGCGGCAACCTGGGCGCCTCAGGCTCAGGCGGCGCCGGCGGCGCGGGGCCAAGTGGCGGTGGCGGTGCCGGTAC
- - - - - - - - - - - - - - tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - -aatgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgcac