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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcaaggcggggggcggctgtcatgggtatgaaaggaaggcacggtgcacgggggggggggggcgtgcagtctcacacgatatgccagcccgcggttgctttccacggctcatcgaccccctgtcaagcaccatggcctgatgcctggcgcaaccccataccggcgcaactgcagGTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTCCACCTTTGGTTCTGTTGGCAATACGACGGCTTTCCTGCACGCTTTGAGT

Basic information

species Chlamydomonas reinhardtii
transcript EDP06524
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10769368|gb|AV620193.1|AV620193
EST:     TATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGATC                         GTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTC
genomic: TATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGATCgtgagtcaag ... gcaactgcagGTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTC
EST: gi|49462651|gb|BP090564.1|BP090564
EST:     TATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGATC                         GTGGAGAGGGCAAAAAAGTGCTTGGACTT
genomic: TATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGATCgtgagtcaag ... gcaactgcagGTGGAGAGGGCAAAAAAGTGCTTGGACTT
EST: gi|22055612|gb|BQ811927.1|BQ811927
EST:     ATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGGATC                         GTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTT
genomic: ATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGG-ATCgtgagtcaag ... gcaactgcagGTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTT
EST: gi|10775112|gb|AV625935.1|AV625935
EST:     TATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGATC                         GTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTC
genomic: TATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGATCgtgagtcaag ... gcaactgcagGTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTC
EST: gi|23366738|gb|BU654557.1|BU654557
EST:     TATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGATC                         GTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTC
genomic: TATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGATCgtgagtcaag ... gcaactgcagGTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTC
EST: gi|10768723|gb|AV619548.1|AV619548
EST:     TATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGATC                         GTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTC
genomic: TATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGATCgtgagtcaag ... gcaactgcagGTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTC
EST: gi|10770294|gb|AV621119.1|AV621119
EST:     TATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGATC                         GTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTC
genomic: TATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTAGTCTGGATCgtgagtcaag ... gcaactgcagGTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtcaagcaccatggcctgatgcctggcgcaaccccataccggcgcaactgcagGTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTCCACCTTTGGTTCTGTTGGCAATACGACGGCTTTCCTGCACGCTTTGAGT
               gcctgat  putative branch site (score: 4)