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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgggagcaccctatatgttcgcttgctcatattgaccgaactgacttgcgtcttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06524
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10769368|gb|AV620193.1|AV620193
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|49462651|gb|BP090564.1|BP090564
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTGGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|22055612|gb|BQ811927.1|BQ811927
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|10775112|gb|AV625935.1|AV625935
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|23366738|gb|BU654557.1|BU654557
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|10768723|gb|AV619548.1|AV619548
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|49460477|gb|BP088390.1|BP088390
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|10770294|gb|AV621119.1|AV621119
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accctatatgttcgcttgctcatattgaccgaactgacttgcgtcttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAG
                               aactgac  putative branch site (score: 2)
     atatgtt  TA-rich tract