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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAGgtacatgagctttttgcgcacccatagtggtgctcgtactgacgggtgcatggcgttccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06524
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10769368|gb|AV620193.1|AV620193
EST:     GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAG                         GGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
genomic: GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAGgtacatgagc ... cgttccgcagGGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
EST: gi|49462651|gb|BP090564.1|BP090564
EST:     GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAG                         GGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
genomic: GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAGgtacatgagc ... cgttccgcagGGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
EST: gi|22055612|gb|BQ811927.1|BQ811927
EST:     GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAG                         GGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
genomic: GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAGgtacatgagc ... cgttccgcagGGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
EST: gi|10775112|gb|AV625935.1|AV625935
EST:     GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAG                         GGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
genomic: GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAGgtacatgagc ... cgttccgcagGGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
EST: gi|23366738|gb|BU654557.1|BU654557
EST:     GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAG                         GGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
genomic: GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAGgtacatgagc ... cgttccgcagGGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
EST: gi|10768723|gb|AV619548.1|AV619548
EST:     GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAG                         GGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
genomic: GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAGgtacatgagc ... cgttccgcagGGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
EST: gi|49460477|gb|BP088390.1|BP088390
EST:     GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAG                         GGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
genomic: GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAGgtacatgagc ... cgttccgcagGGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
EST: gi|10770294|gb|AV621119.1|AV621119
EST:     GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAG                         GGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT
genomic: GCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAGgtacatgagc ... cgttccgcagGGCCATACGTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGT