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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTACTGCACGGATAGGTCAAATTATGCACGAGTCACCTCTGTAGTTCTCAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtgggagcaccctatatgttcgcttgctcatattgaccgaactgacttgcgtcttggccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06524
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10769368|gb|AV620193.1|AV620193
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|49462651|gb|BP090564.1|BP090564
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTGGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|22055612|gb|BQ811927.1|BQ811927
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|10775112|gb|AV625935.1|AV625935
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|23366738|gb|BU654557.1|BU654557
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|10768723|gb|AV619548.1|AV619548
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|49460477|gb|BP088390.1|BP088390
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
EST: gi|10770294|gb|AV621119.1|AV621119
EST:     CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCC                         GTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC
genomic: CAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtggga ... ttggccgcagGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACGCTGCAATGCCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTACTGCACGGATAGGTCAAATTATGCACGAGTCACCTCTGTAGTTCTCAAGCAGCTTATCGCGTCGTGGAACTTCAGAAATGCTCTACGGGCAAGCCgtgagtgggagcaccctatatgttcgcttgctcatattgaccgaactgacttgcgtcttggccgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT