1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccacccgggacagcttacaacctccagtccccagcctgctctcaacaacacttcccgctctcctcaccatatcggacctccatcatgaacccccctgcagGTGGGTGGCCAACATCCTGGGGCTCATCATCATGTCGCTGTTCGGCGAGTGGCTGTGCCTGCGGCGAGAGATGCAGGAGATCCCGCTAA
species | Chlamydomonas reinhardtii |
transcript | EDP06524 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTGGCAATACGACGGCATTCCTGCACGCTTGGAG-G GTGGGTGGCCAACATCCTGGGGCTCATCATCATGTCGCTGTTCGGCGAGTGEST: gi|23366738|gb|BU654557.1|BU654557
genomic: TGTTGGCAATACGACGGCTTTCCTGCACGCTTTGAGTGgtgggtgcgg ... ccccctgcagGTGGGTGGCCAACATCCTGGGGCTCATCATCATGTCGCTGTTCGGCGAGTG
EST: CACCTTTGGTTCTGTTGGCAATACGACGGCTTTCCTGCACGCTTTGAGTG GTGGGTGGCCAACATCCTGGGGCTCATCATCATGTCGCTGTTCGGCGAGTGEST: gi|10770294|gb|AV621119.1|AV621119
genomic: CACCTTTGGTTCTGTTGGCAATACGACGGCTTTCCTGCACGCTTTGAGTGgtgggtgcgg ... ccccctgcagGTGGGTGGCCAACATCCTGGGGCTCATCATCATGTCGCTGTTCGGCGAGTG
EST: CACCTTTGGTTCTGTTGGCAATACGACGGCTTTCCTGCACGCTTTGAGTG GTGGGTGGCCAACATCCTGGGGCTCATC
genomic: CACCTTTGGTTCTGTTGGCAATACGACGGCTTTCCTGCACGCTTTGAGTGgtgggtgcgg ... ccccctgcagGTGGGTGGCCAACATCCTGGGGCTCATC
caacacttcccgctctcctcaccatatcggacctccatcatgaacccccctgcagGTGGGTGGCCAACATCCTGGGGCTCATCATCATGTCGCTGTTCGGCGAGTGGCTGTGCCTGCGGCGAGAGATGCAGGAGATCCCGCTAA
tcctcac putative branch site (score: 2)
cccccctgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacccgggacagcttacaacctccagtccccagcctgctctcaacaacacttcccgctctcctcaccatatcggacctccatcatgaacccccctgcagGTGGGTGGCCAACATCCTGGGGCTCATCATCATGTCGCTGTTCGGCGAGTGGCTGTGCCTGCGGCGAGAGATGCAGGAGATCCCGCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - acaacct
- - - - - - - - - - - - - - - - - - - - - -aacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaac