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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACCAAGGACGGCGTGGAGTACCTGCGCAACTACGAGTATCTGCAGGCCAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatctcggtgtgcgcatgtgtgtgcgtgtgggcgggtgggggtgggggcgttgcacgggggcttgggctcctggtgcgggacggagggggttggg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06519
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23360434|gb|BU648254.1|BU648254
EST:     CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA                         CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGAAGGTGACGGAAG
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: gi|14228778|gb|BG847594.1|BG847594
EST:     CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA                         CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: gi|23367480|gb|BU655298.1|BU655298
EST:     CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA                         CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: gi|15370586|gb|BI530012.1|BI530012
EST:     CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA                         CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: gi|161810403|gb|FC096075.1|FC096075
EST:     CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA                         CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGA
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGA
EST: gi|15368215|gb|BI527641.1|BI527641
EST:     CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGACA                         CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: gi|161799775|gb|FC083242.1|FC083242
EST:     CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA                         CCGTGCTGCGGCAGCGGATACTCAGCCCTCAAG
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCC-TCAAG
EST: gi|10128086|gb|BE726662.1|BE726662
EST:     ACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCCCCGCCA                         CCGTGTTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
genomic: ACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: gi|23360435|gb|BU648255.1|BU648255
EST:     CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA                         CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: gi|12251931|gb|BF861794.1|BF861794
EST:     CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA                         CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCACCAAGGACGGCGTGGAGTACCTGCGCAACTACGAGTATCTGCAGGCCAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatctcggtgtgcgcatgtgtgtgcgtgtgggcgggtgggggtgggggcgttgcacgggggcttgggctcctggtgcgggacggagggggttggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggggt