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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGACCTCGTCAAGCGTAATTCTATGCTAGAGGGTAAGGGCATGACCCTGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccctctcacgagcctggagctagaagcaccgcagctgaagcagttgcgtcgaatttatag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06519
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16438247|gb|BM003467.1|BM003467
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|22052763|gb|BQ810383.1|BQ810383
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|23367481|gb|BU655299.1|BU655299
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|22055624|gb|BQ811934.1|BQ811934
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|161816214|gb|FC102102.1|FC102102
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|22052764|gb|BQ810384.1|BQ810384
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGACTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|15370861|gb|BI530287.1|BI530287
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|161810403|gb|FC096075.1|FC096075
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|16072384|gb|BI874380.1|BI874380
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|10779550|gb|AV636230.1|AV636230
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|22065678|gb|BQ816494.1|BQ816494
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|16437977|gb|BM003197.1|BM003197
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|10780797|gb|AV637477.1|AV637477
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|22061051|gb|BQ814047.1|BQ814047
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGGTGTGGTGCTGNGAGCCGATACCCGCTCCACCTCGGGCTCGACTGT
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGG-TGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGT
EST: gi|23359024|gb|BU646844.1|BU646844
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|161799775|gb|FC083242.1|FC083242
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|22068765|gb|BQ818558.1|BQ818558
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|10128087|gb|BE726663.1|BE726663
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
EST: gi|161812642|gb|FC094779.1|FC094779
EST:     TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAG                         GATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC
genomic: TGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccct ... gaatttatagGATGGTGTGGTGCTGGGAGCCGATACCCGCTCCACCTCGGGCTCGACTGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTGACCTCGTCAAGCGTAATTCTATGCTAGAGGGTAAGGGCATGACCCTGCCAAAGGCGTGGAAGACGGGAACGACTATCGCGGGGCTCATCTTCAAGgtaagcccctctcacgagcctggagctagaagcaccgcagctgaagcagttgcgtcgaatttatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA