1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgtggatttggggcaggtgacgggcacgatgagcgtgctacagctgtttggacccacgcctgagcccgccgtgcctgtgttcctctcttcctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAGGCGTGCCGGAGGAGATGGACGTGTCGTAAGCGGCGGCTGGCGGCAGTTG
species | Chlamydomonas reinhardtii |
transcript | EDP06519 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGAAGGTGACGGAAGEST: gi|14228778|gb|BG847594.1|BG847594
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAGEST: gi|23367480|gb|BU655298.1|BU655298
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAGEST: gi|15370586|gb|BI530012.1|BI530012
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAGEST: gi|161810403|gb|FC096075.1|FC096075
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGAEST: gi|15368215|gb|BI527641.1|BI527641
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGA
EST: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGACA CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAGEST: gi|161799775|gb|FC083242.1|FC083242
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA CCGTGCTGCGGCAGCGGATACTCAGCCCTCAAGEST: gi|10128086|gb|BE726662.1|BE726662
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCC-TCAAG
EST: ACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCCCCGCCA CCGTGTTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAGEST: gi|23360435|gb|BU648255.1|BU648255
genomic: ACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAGEST: gi|12251931|gb|BF861794.1|BF861794
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
EST: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCA CCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
genomic: CAAGACCTACAGCCGCAAGTTCCCCGTCAAGTACGCGCCCGGCACCGCCAgtgagtatct ... cctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAG
tgtttggacccacgcctgagcccgccgtgcctgtgttcctctcttcctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAGGCGTGCCGGAGGAGATGGACGTGTCGTAAGCGGCGGCTGGCGGCAGTTG
ccgtgcctgtgttcct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtggatttggggcaggtgacgggcacgatgagcgtgctacagctgtttggacccacgcctgagcccgccgtgcctgtgttcctctcttcctcccgcagCCGTGCTGCGGCAGCGGATACTCAGCCTCAAGGACGTGGAGGTGACGGAAGGCGTGCCGGAGGAGATGGACGTGTCGTAAGCGGCGGCTGGCGGCAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-tgtggat
- - - - - - - - - - - - - - - - - - - - - - -tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - acccacg