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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cggacgcccctgcccgggaggtcatccccgacaaccgcgcccaccacacctcctccccaaacccccacccctccctcctcccacctccccgcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGCGGCAGCCTGAACGCCATGGCCATGTTCGAGGCCTACTACAAGGACGACA

Basic information

species Chlamydomonas reinhardtii
transcript EDP06519
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10780184|gb|AV636864.1|AV636864
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|16438247|gb|BM003467.1|BM003467
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|23367481|gb|BU655299.1|BU655299
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|22055624|gb|BQ811934.1|BQ811934
EST:     GGCNGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: GGC-GCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|14228778|gb|BG847594.1|BG847594
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|161816214|gb|FC102102.1|FC102102
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|49460700|gb|BP088613.1|BP088613
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|161810403|gb|FC096075.1|FC096075
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|16072384|gb|BI874380.1|BI874380
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|22065678|gb|BQ816494.1|BQ816494
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|15368215|gb|BI527641.1|BI527641
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|16437977|gb|BM003197.1|BM003197
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|23359024|gb|BU646844.1|BU646844
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGTCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|161799775|gb|FC083242.1|FC083242
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|23360435|gb|BU648255.1|BU648255
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
EST: gi|161812642|gb|FC094779.1|FC094779
EST:     CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACG                         ATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC
genomic: CGGCGCTGGTGCTGGGCGGCTATGACATCAACGGCCCCCACCTGTTCACGgtgcgtttgc ... gcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacctcctccccaaacccccacccctccctcctcccacctccccgcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGCGGCAGCCTGAACGCCATGGCCATGTTCGAGGCCTACTACAAGGACGACA
                cccccacccctccctc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cggacgcccctgcccgggaggtcatccccgacaaccgcgcccaccacacctcctccccaaacccccacccctccctcctcccacctccccgcaccaccagATCTACCCTCACGGCTCCACCGACTCGCTGCCCTTCGCCACCATGGGCAGCGGCAGCCTGAACGCCATGGCCATGTTCGAGGCCTACTACAAGGACGACA

- - - - - - - - - - - - - - - acaaccg