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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGGTGTCCGGTCAGCTCGCGCTGCACCGGTACGCCACCGGGCGCAATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgagcagaaagcggaggcacgcgcccgcgccgagaaacgacatacgcgctagcagctcttgtggccaggttttgagcgctcagggctgcgtgtggtctggtaacgattgcacgcttcatggacgctctacacgctgaccgcttaccgtgttgtgttgttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06519
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10780184|gb|AV636864.1|AV636864
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|16438247|gb|BM003467.1|BM003467
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|22052763|gb|BQ810383.1|BQ810383
EST:     AATGCGCGCGTNATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGAC
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGAC
EST: gi|23367481|gb|BU655299.1|BU655299
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|22055624|gb|BQ811934.1|BQ811934
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACNCAGGGGCACGTGGGCGCGGCNGCTGGTGCTGGGCGGCTATGACATC
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTAC-CAGGGGCACGTGGGCGCGGC-GCTGGTGCTGGGCGGCTATGACATC
EST: gi|161816214|gb|FC102102.1|FC102102
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|49460700|gb|BP088613.1|BP088613
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|161810403|gb|FC096075.1|FC096075
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|16072384|gb|BI874380.1|BI874380
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|10779550|gb|AV636230.1|AV636230
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGAC
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGAC
EST: gi|22065678|gb|BQ816494.1|BQ816494
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|16437977|gb|BM003197.1|BM003197
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|22061051|gb|BQ814047.1|BQ814047
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|23359024|gb|BU646844.1|BU646844
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|161799775|gb|FC083242.1|FC083242
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|23360435|gb|BU648255.1|BU648255
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
EST: gi|10128087|gb|BE726663.1|BE726663
EST:     AATGCGCGCGTGATCACGGTCATGACCATGTTCAAGCAGCACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGAC
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGAC
EST: gi|161812642|gb|FC094779.1|FC094779
EST:     AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGTACCTATTCAA                         GTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA
genomic: AATGCGCGCGTCATCACGGCCATGACCATGTTCAAGCAGCACCTATTCAAgtgagttgag ... gttgttgcagGTACCAGGGGCACGTGGGCGCGGCGCTGGTGCTGGGCGGCTATGACATCAA