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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGAGCGTCAAGAAGAGCATTGACGgtgagcatttgcaaaagtccgagaaagacggtattagcatggtttagactgtgcgttaggtagttcaggttgtgacggcgccaggtattcctgctgatgcatctgccagtgggcattccattgctccattccgcccccatgtctgcacgttcttacagtcaactgtgttactttccacctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06252
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7545711|gb|AW676199.1|AW676199
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|7545667|gb|AW676155.1|AW676155
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGTCGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|23364874|gb|BU652694.1|BU652694
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|8286792|gb|BE024351.1|BE024351
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTTGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|12253835|gb|BF863691.1|BF863691
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|15369213|gb|BI528639.1|BI528639
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|22067711|gb|BQ817773.1|BQ817773
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|9210144|gb|BE337059.1|BE337059
EST:     CCGCTGAGCGCGAGAGCGTCAAGAAGAGCATTGACG                         CGTTTGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CCGCTGAGCGCGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|7545564|gb|AW676052.1|AW676052
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|23364875|gb|BU652695.1|BU652695
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGNGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|10770534|gb|AV621359.1|AV621359
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|9027636|gb|BE237676.1|BE237676
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|16438462|gb|BM003682.1|BM003682
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|10772866|gb|AV623689.1|AV623689
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACT
EST: gi|7545710|gb|AW676198.1|AW676198
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|22073248|gb|BQ822586.1|BQ822586
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|9263648|gb|BE351795.1|BE351795
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|16438461|gb|BM003681.1|BM003681
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|49464274|gb|BP092187.1|BP092187
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAA-CTGGCTGGG
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGG
EST: gi|15369212|gb|BI528638.1|BI528638
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|22052593|gb|BQ810292.1|BQ810292
EST:     CAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|10772708|gb|AV623531.1|AV623531
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|9458749|gb|BE452394.1|BE452394
EST:     CGAGAGCGTCAAGAAGAACATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|9210145|gb|BE337060.1|BE337060
EST:     CGAGAGCGTCAAGAAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAAGAAGTAAACTGCCTGGGGAAGGTTG
genomic: CGAGAGCGTCAAGAA-GAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGA-GAAGTAAACTGCCTGGGGA-GGTTG
EST: gi|9458751|gb|BE452395.1|BE452395
EST:     CGAGAGCGTCAAGAAGAACATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGC-TGGGGGAGGGTTG
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGG-AGG-TTG
EST: gi|15371520|gb|BI530946.1|BI530946
EST:     CGAGAGCGTCAAGAAGAACATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGC-TGGGGGGAGGTTG
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGG--AGGTTG
EST: gi|22067710|gb|BQ817772.1|BQ817772
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
EST: gi|12253186|gb|BF863042.1|BF863042
EST:     CGAGAGCGTCAAGAAGAGCATTGACG                         CGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT
genomic: CGAGAGCGTCAAGAAGAGCATTGACGgtgagcattt ... ccacctgcagCGTTCGTCAAGTCCGTCACCGGCGAGAAGTAAACTGCCTGGGGAGGTTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAGAGCGTCAAGAAGAGCATTGACGgtgagcatttgcaaaagtccgagaaagacggtattagcatggtttagactgtgcgttaggtagttcaggttgtgacggcgccaggtattcctgctgatgcatctgccagtgggcattccattgctccattccgcccccatgtctgcacgttcttacagtcaactgtgttactttccacctgcag

- - - - - AAGAAG
- - - - - - - AGAGCA