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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGTTCTGGTGCGCGCTGAGCCCGAGAGCTCGACCTCGGCTGAGGATCCCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgactggttggggacttgcaggcagttcgagctggcgaggatgggtgacagaactcaaattagccgtgtgcctataccattattagccttgctgt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06252
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7545711|gb|AW676199.1|AW676199
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|22073250|gb|BQ822588.1|BQ822588
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|7545667|gb|AW676155.1|AW676155
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|12253835|gb|BF863691.1|BF863691
EST:     AGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: AGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|15369213|gb|BI528639.1|BI528639
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|22067711|gb|BQ817773.1|BQ817773
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|49459101|gb|BP087014.1|BP087014
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|7545564|gb|AW676052.1|AW676052
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|23364875|gb|BU652695.1|BU652695
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|16438462|gb|BM003682.1|BM003682
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|10772866|gb|AV623689.1|AV623689
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|49458775|gb|BP086688.1|BP086688
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|49459773|gb|BP087686.1|BP087686
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|49464274|gb|BP092187.1|BP092187
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|10781535|gb|AV638215.1|AV638215
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|10770858|gb|AV621683.1|AV621683
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|49459524|gb|BP087437.1|BP087437
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|9210145|gb|BE337060.1|BE337060
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|9458751|gb|BE452395.1|BE452395
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|15371520|gb|BI530946.1|BI530946
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|7545600|gb|AW676088.1|AW676088
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|10782575|gb|AV639247.1|AV639247
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|10126528|gb|BE725232.1|BE725232
EST:     CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAG                         GGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
genomic: CCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGACTCGGAGAAGCCTGCTGCCATTGCCATC
EST: gi|12253186|gb|BF863042.1|BF863042
EST:     AGCAGCCCGAGGAAGTCCTTAAGCAAGTGCAG                         GGC-AGTGGGAGAGCA-CGACGATCTCGGAGAAGCTTGCTGCCATTGCAAT
genomic: AGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgact ... acgcacacagGGCAAGTGGGAGAGCACCGACGA-CTCGGAGAAGCCTGCTGCCATTGCCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCCGTTCTGGTGCGCGCTGAGCCCGAGAGCTCGACCTCGGCTGAGGATCCCTCCGTCAAGCTCCAGAAGCAGGCCGAGGAGGTCCTGAAGCAAGTGCAGgtaagcgactggttggggacttgcaggcagttcgagctggcgaggatgggtgacagaactcaaattagccgtgtgcctataccattattagccttgctgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctat