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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACTCGGAGAAGCCTGCTGCCATTGCCATCATCGTTGGTGTCATCGTGGCTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccaggctgctgccgggtgtgaccaggcacccgtgccagacaccgtttggctttaccgtcgcgtttgtcgcttggctgcacgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06252
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7545711|gb|AW676199.1|AW676199
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|22073250|gb|BQ822588.1|BQ822588
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|7545667|gb|AW676155.1|AW676155
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|23364874|gb|BU652694.1|BU652694
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|12253835|gb|BF863691.1|BF863691
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|15369213|gb|BI528639.1|BI528639
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|22067711|gb|BQ817773.1|BQ817773
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|7545564|gb|AW676052.1|AW676052
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|23364875|gb|BU652695.1|BU652695
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|10770534|gb|AV621359.1|AV621359
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|9027636|gb|BE237676.1|BE237676
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|16438462|gb|BM003682.1|BM003682
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|10772866|gb|AV623689.1|AV623689
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|49458775|gb|BP086688.1|BP086688
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCG
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCG
EST: gi|7545710|gb|AW676198.1|AW676198
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|22073248|gb|BQ822586.1|BQ822586
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|9263648|gb|BE351795.1|BE351795
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|16438461|gb|BM003681.1|BM003681
EST:     CTCAGATTGCCATTGGCGCCACCATTGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|49464274|gb|BP092187.1|BP092187
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|15369212|gb|BI528638.1|BI528638
EST:     CTCAGATTGCCATCGGCGCCACCATTGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|10770858|gb|AV621683.1|AV621683
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGT
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGT
EST: gi|49459524|gb|BP087437.1|BP087437
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGA
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGA
EST: gi|9210145|gb|BE337060.1|BE337060
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|9458751|gb|BE452395.1|BE452395
EST:     CTCAGATTGCCATCGGCGCCACCATCNACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|15371520|gb|BI530946.1|BI530946
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|10782575|gb|AV639247.1|AV639247
EST:     CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTT
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTT
EST: gi|22067710|gb|BQ817772.1|BQ817772
EST:     GCCACCATAGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: GCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
EST: gi|12253186|gb|BF863042.1|BF863042
EST:     CTCAGATCGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATC                         GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC
genomic: CTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccag ... ctgcacgcagGTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGACTCGGAGAAGCCTGCTGCCATTGCCATCATCGTTGGTGTCATCGTGGCTCAGATTGCCATCGGCGCCACCATCGACGCTGTTGACAAGATCCCCATCgtgagtccaggctgctgccgggtgtgaccaggcacccgtgccagacaccgtttggctttaccgtcgcgtttgtcgcttggctgcacgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT