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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAACAAGGGCCTGCAGCTGATCGGTGTGGCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgtagtctctgcaacgaaatgcatgtgcaacaacgcaactctagcgcaaactgtaggcattctgctcagcctgaaaccttgtctgccctcctgttttccacacctgtgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06252
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7545711|gb|AW676199.1|AW676199
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|22073250|gb|BQ822588.1|BQ822588
EST:     CCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTG
genomic: CCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGC-TGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTG
EST: gi|7545667|gb|AW676155.1|AW676155
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|23364874|gb|BU652694.1|BU652694
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTTAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|8286792|gb|BE024351.1|BE024351
EST:     TTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: TTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|12253835|gb|BF863691.1|BF863691
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|15369213|gb|BI528639.1|BI528639
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|22067711|gb|BQ817773.1|BQ817773
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|7545564|gb|AW676052.1|AW676052
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|23364875|gb|BU652695.1|BU652695
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|10770534|gb|AV621359.1|AV621359
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|9027636|gb|BE237676.1|BE237676
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|16438462|gb|BM003682.1|BM003682
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|10772866|gb|AV623689.1|AV623689
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|7545710|gb|AW676198.1|AW676198
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|22073248|gb|BQ822586.1|BQ822586
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|9263648|gb|BE351795.1|BE351795
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|16438461|gb|BM003681.1|BM003681
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|49464274|gb|BP092187.1|BP092187
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|15369212|gb|BI528638.1|BI528638
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|10772708|gb|AV623531.1|AV623531
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|9458749|gb|BE452394.1|BE452394
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAACATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|9210145|gb|BE337060.1|BE337060
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAA-GAGCATTGACG
EST: gi|9458751|gb|BE452395.1|BE452395
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAACATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|15371520|gb|BI530946.1|BI530946
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAACATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|22067710|gb|BQ817772.1|BQ817772
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG
EST: gi|12253186|gb|BF863042.1|BF863042
EST:     GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCG                         CGAGAGCGTCAAGAAGAGCATTGACG
genomic: GCCGTCACCGGTCTGTTCACCTACCGCTACTTCACTGACCCCGCTGAGCGgtaagccgta ... ctgtgcgcagCGAGAGCGTCAAGAAGAGCATTGACG