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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGCCTCGGCCGACAAGGCCAAGCGCGAGCTGGGCTGGAAGCCCAAGCACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAACgtgagtgcggcagggggagcaacggtgccggcgcaggagctgggctggtgctggggccgcggggcggggcggagctggcgctgggttggggagcagctgg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05800
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22069193|gb|BQ818856.1|BQ818856
EST:     ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAAC                         GGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT
genomic: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAACgtgagtgcgg ... actcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT
EST: gi|161799849|gb|FC087827.1|FC087827
EST:     ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACNAGGCAAAC                         GGCCGCGACAAGAAGGAGGTGGACTTCTCTGTCGACGACAAGATTCTGGCT
genomic: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAACgtgagtgcgg ... actcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT
EST: gi|23366709|gb|BU654528.1|BU654528
EST:     ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAAC                         GGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT
genomic: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAACgtgagtgcgg ... actcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT
EST: gi|8576830|gb|BE129467.1|BE129467
EST:     ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAAC                         GGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT
genomic: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAACgtgagtgcgg ... actcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT
EST: gi|161819478|gb|FC108293.1|FC108293
EST:     ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAAC                         GGCCGCGACAAGAAGGAGGTGGACTTCTCTGTCGACGACAAGATTCTGGCT
genomic: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAACgtgagtgcgg ... actcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCGCCTCGGCCGACAAGGCCAAGCGCGAGCTGGGCTGGAAGCCCAAGCACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAACgtgagtgcggcagggggagcaacggtgccggcgcaggagctgggctggtgctggggccgcggggcggggcggagctggcgctgggttggggagcagctgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggttg