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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGCGCGCCTGCCCTACACCGTCTTCCAGCCGCTCTACATCTACGGCCCCAACACGGCCAAGGACTGCGAGCAGTGGTTCGTGGACCGCATCATCCGgtgcgtgcggtgcgggggttggtagggactgcaagtgtgagggagagaggggtcgggcagtgcgggcgacggggctgtaagggtggcctgaggctggagggctggggcagtgggcaaaaccacacggcgaagctgaggcgctccgattcaccacttccctctcgctacgaccccccctctccacacgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05800
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161799849|gb|FC087827.1|FC087827
EST:     CCCAACACGGCCAAGGACTGCGAGCAGTGGTTCGTGGACCGCATCATCCG                         CGACCGCCCGGTGCTGCTGCCCGCGCCCGGCGTGCAGCTGACCAGCCTGAC
genomic: CCCAACACGGCCAAGGACTGCGAGCAGTGGTTCGTGGACCGCATCATCCGgtgcgtgcgg ... acacgcgcagGGACCGCCCGGTGCTGCTGCCTGCGCCCGGCGTGCAGCTGACCAGCCTGAC
EST: gi|8576830|gb|BE129467.1|BE129467
EST:     CCCAACACGGCCAAGGACTGCGAGCAGTGGTTCGTGGACCGCATCATCCG                         CGACCGCCCGGTGCTGCTGCCTGCGCCCGGCGTGCAGCTGACCAGCCTGAC
genomic: CCCAACACGGCCAAGGACTGCGAGCAGTGGTTCGTGGACCGCATCATCCGgtgcgtgcgg ... acacgcgcagGGACCGCCCGGTGCTGCTGCCTGCGCCCGGCGTGCAGCTGACCAGCCTGAC
EST: gi|16433886|gb|BI999112.1|BI999112
EST:     CCCAACACGGCCAAGGACTGCGAGCAGTGGTTCGTGGACCGCATCATCCG                         CGACCGCCCGGTGCTGCTGCCTGCGCCCGGCGTGCAGCTGACCAGCCTGAC
genomic: CCCAACACGGCCAAGGACTGCGAGCAGTGGTTCGTGGACCGCATCATCCGgtgcgtgcgg ... acacgcgcagGGACCGCCCGGTGCTGCTGCCTGCGCCCGGCGTGCAGCTGACCAGCCTGAC
EST: gi|161819478|gb|FC108293.1|FC108293
EST:     CCCAACACGGCCAAGGACTGCGAGCAGTGGTTCGTGGACCGCATCATCCG                         CGACCGCCCGGTGCTGCTGCCCGCGCCCGGCGTGCAGCTGACCAGCCTGAC
genomic: CCCAACACGGCCAAGGACTGCGAGCAGTGGTTCGTGGACCGCATCATCCGgtgcgtgcgg ... acacgcgcagGGACCGCCCGGTGCTGCTGCCTGCGCCCGGCGTGCAGCTGACCAGCCTGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAGGCGCGCCTGCCCTACACCGTCTTCCAGCCGCTCTACATCTACGGCCCCAACACGGCCAAGGACTGCGAGCAGTGGTTCGTGGACCGCATCATCCGgtgcgtgcggtgcgggggttggtagggactgcaagtgtgagggagagaggggtcgggcagtgcgggcgacggggctgtaagggtggcctgaggctggagggctggggcagtgggcaaaaccacacggcgaagctgaggcgctccgattcaccacttccctctcgctacgaccccccctctccacacgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG