1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAACACCAAGGGCGGTGGCCACGCGTTCATTGGTCTGTACCTGGCGAAGGAGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaagggtaactggggtggggcgaagggtgaagcgcgctggggcagggcgcgtaagacgagcgatgcaagcaaaccggactggtgaagccagctt...
species | Chlamydomonas reinhardtii |
transcript | EDP05800 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|10779819|gb|AV636499.1|AV636499
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|10779281|gb|AV635961.1|AV635961
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|10781417|gb|AV638097.1|AV638097
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|10779045|gb|AV635725.1|AV635725
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|7616243|gb|AW721683.1|AW721683
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|49461733|gb|BP089646.1|BP089646
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: CATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|10125774|gb|BE724478.1|BE724478
genomic: CATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|10785339|gb|AV642011.1|AV642011
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|10781873|gb|AV638553.1|AV638553
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|10783268|gb|AV639940.1|AV639940
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|10786557|gb|AV643229.1|AV643229
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|49459805|gb|BP087718.1|BP087718
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|10780507|gb|AV637187.1|AV637187
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACGAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|49459656|gb|BP087569.1|BP087569
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|10784186|gb|AV640858.1|AV640858
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|49460342|gb|BP088255.1|BP088255
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|10779414|gb|AV636094.1|AV636094
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|49462803|gb|BP090716.1|BP090716
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|22069194|gb|BQ818857.1|BQ818857
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGCEST: gi|14224646|gb|BG843462.1|BG843462
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
EST: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCG GACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
genomic: AGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaag ... ttgcaaacagGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACACCAAGGGCGGTGGCCACGCGTTCATTGGTCTGTACCTGGCGAAGGAGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGATGGTGACTCGgtaagcaaagggtaactggggtggggcgaagggtgaagcgcgctggggcagggcgcgtaagacgagcgatgcaagcaaaccggactggtgaagccagctt
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaactg