1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccatatcttgaaccaggcgtcaacaccctacctttcctgaaacgggtcagccacctatgtcctccgaccgcctaaccccttctacaacgcactcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCTGCCCTGGGCAAGTCCGTGCCCAAGTCCTCCTCCAACTCCTCCGTGTCTG
species | Chlamydomonas reinhardtii |
transcript | EDP05800 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAAC GGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCTEST: gi|161799849|gb|FC087827.1|FC087827
genomic: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAACgtgagtgcgg ... actcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT
EST: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACNAGGCAAAC GGCCGCGACAAGAAGGAGGTGGACTTCTCTGTCGACGACAAGATTCTGGCTEST: gi|23366709|gb|BU654528.1|BU654528
genomic: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAACgtgagtgcgg ... actcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT
EST: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAAC GGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCTEST: gi|8576830|gb|BE129467.1|BE129467
genomic: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAACgtgagtgcgg ... actcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT
EST: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAAC GGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCTEST: gi|161819478|gb|FC108293.1|FC108293
genomic: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAACgtgagtgcgg ... actcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT
EST: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAAC GGCCGCGACAAGAAGGAGGTGGACTTCTCTGTCGACGACAAGATTCTGGCT
genomic: ACGACTTCCAAAAGGACGTGCAGGGCCTGGTCAACGACTACAAGGCAAACgtgagtgcgg ... actcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCT
gtcagccacctatgtcctccgaccgcctaaccccttctacaacgcactcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCTGCCCTGGGCAAGTCCGTGCCCAAGTCCTCCTCCAACTCCTCCGTGTCTG
gcctaac putative branch site (score: 2)
cactctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatatcttgaaccaggcgtcaacaccctacctttcctgaaacgggtcagccacctatgtcctccgaccgcctaaccccttctacaacgcactcttgcagGGCCGCGACAAGAAGGAGGTGGACTTCTCCGTCGATGACAAGATTCTGGCTGCCCTGGGCAAGTCCGTGCCCAAGTCCTCCTCCAACTCCTCCGTGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - acaccct
- - - - - - - - - - - - - - - - - - ctgaaac
- - - - - - - - - - - - - - - - - - - - - - - tcagcca