1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgctgcctacctccctgcctgtctccgctgcggtgcagcccagcgcacttgggtttggttttgatcgcttccctcgctgccctacatgcccgcaaccagGCATTGCCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATCCTGTACAGCCCGGAGAAGGTGGGCACCGGCAAGAGCGGCAAGGCGGAGGG
species | Chlamydomonas reinhardtii |
transcript | EDP05800 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATCGGCCAGCACTACAACGTGTGCAGCGACCGCTGCATCACCTTCACCG GCA-TGNCCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATCEST: gi|161799849|gb|FC087827.1|FC087827
genomic: CATCGGCCAGCACTACAACGTGTGCAGCGACCGCTGCATCACCTTCACCGgtgaggtgga ... ccgcaaccagGCATTG-CCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATC
EST: CATCGGCCAGCACTACAACGTGTGCAGCGACCGCTGCATCACCTTCACCG GCATTGCCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATCCEST: gi|23366709|gb|BU654528.1|BU654528
genomic: CATCGGCCAGCACTACAACGTGTGCAGCGACCGCTGCATCACCTTCACCGgtgaggtgga ... ccgcaaccagGCATTGCCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATCC
EST: CATCGGCCAGCACTACAACGTGTGCAGCGACCGCTGCATCACCTTCACCG GCATTGCCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATCCEST: gi|8576830|gb|BE129467.1|BE129467
genomic: CATCGGCCAGCACTACAACGTGTGCAGCGACCGCTGCATCACCTTCACCGgtgaggtgga ... ccgcaaccagGCATTGCCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATCC
EST: CATCGGCCAGCACTACAACGTGTGCAGCGACCGCTGCATCACCTTCACCG GCATTGCCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATCCEST: gi|161819478|gb|FC108293.1|FC108293
genomic: CATCGGCCAGCACTACAACGTGTGCAGCGACCGCTGCATCACCTTCACCGgtgaggtgga ... ccgcaaccagGCATTGCCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATCC
EST: CATCGGCCAGCACTACAACGTGTGCAGCGACCGCTGCATCACCTTCACCG GCATTGCCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATCC
genomic: CATCGGCCAGCACTACAACGTGTGCAGCGACCGCTGCATCACCTTCACCGgtgaggtgga ... ccgcaaccagGCATTGCCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATCC
gcacttgggtttggttttgatcgcttccctcgctgccctacatgcccgcaaccagGCATTGCCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATCCTGTACAGCCCGGAGAAGGTGGGCACCGGCAAGAGCGGCAAGGCGGAGGG
ttttgat putative branch site (score: 4)
ttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgctgcctacctccctgcctgtctccgctgcggtgcagcccagcgcacttgggtttggttttgatcgcttccctcgctgccctacatgcccgcaaccagGCATTGCCAAGGCCATTGGCAAGGCCCTGGGCAAGGACCCGGAGATCATCCTGTACAGCCCGGAGAAGGTGGGCACCGGCAAGAGCGGCAAGGCGGAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - tgcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggttt