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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCAAGCCGTCGACCTACCCTCGCGGCACCTTTGACGTGGTGTATGACAACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgggcagccgggagggggaagggcgtgccggggagctgcaaaacacataaacctaccacgcgggcgggcgccagcttcgtccggcttggccgc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05800
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10126918|gb|BE725622.1|BE725622
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|10779819|gb|AV636499.1|AV636499
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACT
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACT
EST: gi|10779045|gb|AV635725.1|AV635725
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACTACGTGTTCGTG
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTG
EST: gi|7616243|gb|AW721683.1|AW721683
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACTACGTGTACGTGTCCTCGGCCGGCGCCTACAAAGCC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|161799849|gb|FC087827.1|FC087827
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGACCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|49461733|gb|BP089646.1|BP089646
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGATGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|10125774|gb|BE724478.1|BE724478
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCT
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|10785339|gb|AV642011.1|AV642011
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|10783268|gb|AV639940.1|AV639940
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|10786557|gb|AV643229.1|AV643229
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|10780507|gb|AV637187.1|AV637187
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|10779414|gb|AV636094.1|AV636094
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGAC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|16433886|gb|BI999112.1|BI999112
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|22069194|gb|BQ818857.1|BQ818857
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|161819478|gb|FC108293.1|FC108293
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGACCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
EST: gi|14224646|gb|BG843462.1|BG843462
EST:     ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAG                         CACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
genomic: ACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgg ... ccacacacagCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCAAGCCGTCGACCTACCCTCGCGGCACCTTTGACGTGGTGTATGACAACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGACCACTTCAAGgtaaacatgggcagccgggagggggaagggcgtgccggggagctgcaaaacacataaacctaccacgcgggcgggcgccagcttcgtccggcttggccgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccta