1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGTGGTTCACCGCGGCGGCCAGCCCCAAGCTGCTGCTAAAGGAGGTGGAGCACGGCCAGGGGCCCAGCTTCTGGCACGAGCTCATGACGCTGCTTGGAGgtaagcaacttggtctcgtttgggagaagggcgacggtgcttgtagtttatactctgccaagacctggggtgggtgtttgcaccaacttatgagagtttggggaggggcgggtagtaaagcagcttgtaagtcacagcgtaacgggcccttccttatattgttttagtatggcttctgtgttgtggctgcacgcag
species | Chlamydomonas reinhardtii |
transcript | EDP04522 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCACGGCCAGGGGCCCAGCTTCTGGCACGAGCTCATGACGCTGCTTGGAG GTGACTATGCAGAGCTCTCCAAGGGGCTGCGCAAACACGACGACCTGGACGEST: gi|16428965|gb|BI994191.1|BI994191
genomic: GCACGGCCAGGGGCCCAGCTTCTGGCACGAGCTCATGACGCTGCTTGGAGgtaagcaact ... ctgcacgcagGTGACTATGCAGAGCTCTCCAAGGGGCTGCGCAAACACGACGACCTGGACG
EST: GCACGGCCAGGGGCCCAGCTTCTGGCACGAGCTCATGACGCTGCTTGGAG GTGACTATGCAGAGCTCTCCAAGGGGCTGCGCAAACACGACGACCTGGACGEST: gi|22073357|gb|BQ822695.1|BQ822695
genomic: GCACGGCCAGGGGCCCAGCTTCTGGCACGAGCTCATGACGCTGCTTGGAGgtaagcaact ... ctgcacgcagGTGACTATGCAGAGCTCTCCAAGGGGCTGCGCAAACACGACGACCTGGACG
EST: GCACGGCCAGGGGCCCAGCTTCTGGCACGAGCTCATGACGCTGCTTGGAG GTGACTATGCAGAGCTCTCCAAGGGGCTGCGCAAACACGACGACCTGGACGEST: gi|15693491|gb|BI717796.1|BI717796
genomic: GCACGGCCAGGGGCCCAGCTTCTGGCACGAGCTCATGACGCTGCTTGGAGgtaagcaact ... ctgcacgcagGTGACTATGCAGAGCTCTCCAAGGGGCTGCGCAAACACGACGACCTGGACG
EST: GCACGGCCAGGGGCCCAGCTTCTGGCACGAGCTCATGACGCTGCTTGGAG GTGACTATGCAGAGCTCTCCAAGGGGCTGCGCAAACACGACGACCTGGACGEST: gi|14227568|gb|BG846384.1|BG846384
genomic: GCACGGCCAGGGGCCCAGCTTCTGGCACGAGCTCATGACGCTGCTTGGAGgtaagcaact ... ctgcacgcagGTGACTATGCAGAGCTCTCCAAGGGGCTGCGCAAACACGACGACCTGGACG
EST: GCACGGCCAGGGGCCCAGCTTCTGGCACGAGCTCATGACGCTGCTTGGAG GTGACTATGCAGAGCTCTCCAAGGGGCTGCGCAAACACGACGACCTGGACG
genomic: GCACGGCCAGGGGCCCAGCTTCTGGCACGAGCTCATGACGCTGCTTGGAGgtaagcaact ... ctgcacgcagGTGACTATGCAGAGCTCTCCAAGGGGCTGCGCAAACACGACGACCTGGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGGTTCACCGCGGCGGCCAGCCCCAAGCTGCTGCTAAAGGAGGTGGAGCACGGCCAGGGGCCCAGCTTCTGGCACGAGCTCATGACGCTGCTTGGAGgtaagcaacttggtctcgtttgggagaagggcgacggtgcttgtagtttatactctgccaagacctggggtgggtgtttgcaccaacttatgagagtttggggaggggcgggtagtaaagcagcttgtaagtcacagcgtaacgggcccttccttatattgttttagtatggcttctgtgttgtggctgcacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG