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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGgttagtgcctagctcccccctgaatagcaatgggggtgacaccacttcggcaggaaacctgttctgcagcagagccgatcatgcgccgccgctgaaccgacttgcgttttctgcatgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04522
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22073358|gb|BQ822696.1|BQ822696
EST:     GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG                         TCTGCGGACGAGTGGGCGCACATCATTCCCAAACCCGAGAAGGGCGCGCTG
genomic: GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGgttagtgcct ... ctgcatgcagTCTGCGGACGAGTGGGCGCACATCATTCCCAAACCCGAGAAGGGCGCGCTG
EST: gi|16438153|gb|BM003373.1|BM003373
EST:     GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG                         TCTGCGGACGAGTGGGCGCACATCATTCCCAAACCCGAGAAGGGCGCGCTG
genomic: GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGgttagtgcct ... ctgcatgcagTCTGCGGACGAGTGGGCGCACATCATTCCCAAACCCGAGAAGGGCGCGCTG
EST: gi|15694488|gb|BI718793.1|BI718793
EST:     GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG                         TCTGCGGACGAGTGGGCGCACATCATTCCCAAACCCGAGAAGGGCGCGCTG
genomic: GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGgttagtgcct ... ctgcatgcagTCTGCGGACGAGTGGGCGCACATCATTCCCAAACCCGAGAAGGGCGCGCTG
EST: gi|23367524|gb|BU655342.1|BU655342
EST:     GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG                         TCTGCGGACGAGTGGGCGCACATCATTCCCAAACCCGAGAAGGGCGCGCTG
genomic: GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGgttagtgcct ... ctgcatgcagTCTGCGGACGAGTGGGCGCACATCATTCCCAAACCCGAGAAGGGCGCGCTG
EST: gi|15693492|gb|BI717797.1|BI717797
EST:     GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG                         TCTGCGGACGAGTGGGCGCACATCATTCCCAAACCCGAGAAGGGCGCGCTG
genomic: GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGgttagtgcct ... ctgcatgcagTCTGCGGACGAGTGGGCGCACATCATTCCCAAACCCGAGAAGGGCGCGCTG
EST: gi|10771140|gb|AV621963.1|AV621963
EST:     GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG                         TCTGCGGACGAGTGGGCGCACATCATTC
genomic: GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGgttagtgcct ... ctgcatgcagTCTGCGGACGAGTGGGCGCACATCATTC
EST: gi|15700000|gb|BI724305.1|BI724305
EST:     GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG                         TCTGCGGACGAGTGGGCGCACATCATTCCCAAACCCGAGAAGGGCGCGCTG
genomic: GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGgttagtgcct ... ctgcatgcagTCTGCGGACGAGTGGGCGCACATCATTCCCAAACCCGAGAAGGGCGCGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGgttagtgcctagctcccccctgaatagcaatgggggtgacaccacttcggcaggaaacctgttctgcagcagagccgatcatgcgccgccgctgaaccgacttgcgttttctgcatgcag

-  CAAGCT
- - AAGCTG