1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtacagtgttatagtctggtagcgctagcagcgtcgcatccattgcttgagcccgcctgagtcttccctctctgtttgacccggtccttttccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCCCCTGAAGCGGCCGCAGACGCAGTTCAACGACTGCCGGCTGTACGTGGGC
species | Chlamydomonas reinhardtii |
transcript | EDP04522 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAG CTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCCEST: gi|16438153|gb|BM003373.1|BM003373
genomic: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttcca ... tccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
EST: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAG CTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCCEST: gi|15694488|gb|BI718793.1|BI718793
genomic: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttcca ... tccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
EST: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAG CTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCCEST: gi|23367524|gb|BU655342.1|BU655342
genomic: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttcca ... tccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
EST: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAGTGGCAG CTACGGCGTCATTCTCAACCGEST: gi|15693492|gb|BI717797.1|BI717797
genomic: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttcca ... tccgctgcagCTACGGCGTCATTCTCAACCG
EST: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAG CTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCCEST: gi|15700000|gb|BI724305.1|BI724305
genomic: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttcca ... tccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
EST: TACTTTCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAG CTACAGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
genomic: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttcca ... tccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
cttgagcccgcctgagtcttccctctctgtttgacccggtccttttccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCCCCTGAAGCGGCCGCAGACGCAGTTCAACGACTGCCGGCTGTACGTGGGC
gtttgac putative branch site (score: 4)
cccggtccttttcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtgttatagtctggtagcgctagcagcgtcgcatccattgcttgagcccgcctgagtcttccctctctgtttgacccggtccttttccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCCCCTGAAGCGGCCGCAGACGCAGTTCAACGACTGCCGGCTGTACGTGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - agtgtta
- - - - - - - - - - - - - - - - - -gcatcca
- - - - - - - - - - - - - - - - - - - - - ttgcttg