1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgggtccaagatgatcctaaggccgtaagcggagaggccggtgtggtcacgcgcaagtgttgcggaactgcgggtatgggcgcgcggactgacgtttcggaccgccacgtggctcgtgccgctcgcagGGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG
species | Chlamydomonas reinhardtii |
transcript | EDP04522 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAG GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGEST: gi|16438153|gb|BM003373.1|BM003373
genomic: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAGgtgggtccaa ... ccgctcgcagGGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG
EST: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAG GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGEST: gi|15694488|gb|BI718793.1|BI718793
genomic: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAGgtgggtccaa ... ccgctcgcagGGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG
EST: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAG GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGEST: gi|23367524|gb|BU655342.1|BU655342
genomic: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAGgtgggtccaa ... ccgctcgcagGGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG
EST: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAG GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGEST: gi|15693492|gb|BI717797.1|BI717797
genomic: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAGgtgggtccaa ... ccgctcgcagGGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG
EST: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAG GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGEST: gi|10771140|gb|AV621963.1|AV621963
genomic: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAGgtgggtccaa ... ccgctcgcagGGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG
EST: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAG GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACGEST: gi|15700000|gb|BI724305.1|BI724305
genomic: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAGgtgggtccaa ... ccgctcgcagGGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG
EST: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAG GGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG
genomic: CCCGACACGCTGCCCTACCTGGGCAGTCAGAGCGATTGGCGCGAGTTCAGgtgggtccaa ... ccgctcgcagGGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG
gtatgggcgcgcggactgacgtttcggaccgccacgtggctcgtgccgctcgcagGGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG
gactgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtccaagatgatcctaaggccgtaagcggagaggccggtgtggtcacgcgcaagtgttgcggaactgcgggtatgggcgcgcggactgacgtttcggaccgccacgtggctcgtgccgctcgcagGGCCAAGCTGGTCTCCCAAAGCCGCGGGCAAGGATCGGCATCAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG