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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGCGCGCTGCTCTTGGCCCATCCGCTCCTGTTCCAAAACTCCCAGACCTACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttccacacactgaacgcagtgtgacaaggatggggctgcaaggagtgcccagttgcgatgccatgcgtacccacgcccggctaggccaggttttt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04522
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22073358|gb|BQ822696.1|BQ822696
EST:     TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAG                         CTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
genomic: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttcca ... tccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
EST: gi|16438153|gb|BM003373.1|BM003373
EST:     TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAG                         CTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
genomic: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttcca ... tccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
EST: gi|15694488|gb|BI718793.1|BI718793
EST:     TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAG                         CTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
genomic: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttcca ... tccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
EST: gi|23367524|gb|BU655342.1|BU655342
EST:     TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAGTGGCAG                         CTACGGCGTCATTCTCAACCG
genomic: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttcca ... tccgctgcagCTACGGCGTCATTCTCAACCG
EST: gi|15693492|gb|BI717797.1|BI717797
EST:     TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAG                         CTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
genomic: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttcca ... tccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
EST: gi|15700000|gb|BI724305.1|BI724305
EST:     TACTTTCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAG                         CTACAGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC
genomic: TACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttcca ... tccgctgcagCTACGGCGTCATTCTCAACCGGCCATCCACCTACTTCATTCGGGATATCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGCGCGCTGCTCTTGGCCCATCCGCTCCTGTTCCAAAACTCCCAGACCTACTTCCACCGGGCCGCCATCTTGTTACTGGAGCACGGCGACAATGGCAGgcaggttccacacactgaacgcagtgtgacaaggatggggctgcaaggagtgcccagttgcgatgccatgcgtacccacgcccggctaggccaggttttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccacgc