1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccccagcacatgaggccggaagctcaagccgtcgctggactgtgggtgccgctcacttgttccggttgttgagcttccgcggccgctgtgtttgcgccagGGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGACGCTGCTGACGCCGCTGCGGCCTCCTCCTCCAGTGTGGTCCCCGACACG
species | Chlamydomonas reinhardtii |
transcript | EDP04522 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGG GGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGAEST: gi|16438153|gb|BM003373.1|BM003373
genomic: CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGGgtaggcaatt ... tttgcgccagGGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGA
EST: CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGG GGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGAEST: gi|15694488|gb|BI718793.1|BI718793
genomic: CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGGgtaggcaatt ... tttgcgccagGGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGA
EST: CGCCGCGGAAGAGTCAGG GGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGAEST: gi|23367524|gb|BU655342.1|BU655342
genomic: CGCCGCGGAAGAGTCAGGgtaggcaatt ... tttgcgccagGGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGA
EST: CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGG GGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGAEST: gi|15693492|gb|BI717797.1|BI717797
genomic: CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGGgtaggcaatt ... tttgcgccagGGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGA
EST: CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGG GGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGAEST: gi|10771140|gb|AV621963.1|AV621963
genomic: CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGGgtaggcaatt ... tttgcgccagGGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGA
EST: CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGG GGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGAEST: gi|15700000|gb|BI724305.1|BI724305
genomic: CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGGgtaggcaatt ... tttgcgccagGGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGA
EST: CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGG GGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGA
genomic: CACCCCTGCCTGCGCACGGTCCGGGCCAGCGCCGCGGAAGAGTCAGGgtaggcaatt ... tttgcgccagGGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGA
gtgccgctcacttgttccggttgttgagcttccgcggccgctgtgtttgcgccagGGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGACGCTGCTGACGCCGCTGCGGCCTCCTCCTCCAGTGTGGTCCCCGACACG
cgctcac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccagcacatgaggccggaagctcaagccgtcgctggactgtgggtgccgctcacttgttccggttgttgagcttccgcggccgctgtgtttgcgccagGGATGCAAGCGGCAGCGGCGAGCCGCCCAAGCGGCCGCATCCGGAGATGGACGCTGCTGACGCCGCTGCGGCCTCCTCCTCCAGTGTGGTCCCCGACACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- -cagcaca
- - - - - - - - - -aagctca
- - - - - - - - - - - - - - - - - - - - tgtgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgtt