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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGCGGGACCAGCCATTCCCACACCCGAGGAGATTGAGGCGGCGGAGGCGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatcttgtatgtgtgttgtgaagcatgaggcgaagggaagcacaaaggccatgcgagcgatgcggtgtcacctggtgtgatgaccctcgctgtg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04327
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15697285|gb|BI721590.1|BI721590
EST:     CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAG                         GGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
genomic: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
EST: gi|16428672|gb|BI993898.1|BI993898
EST:     CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAG                         GGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
genomic: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
EST: gi|8576734|gb|BE129371.1|BE129371
EST:     CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAG                         GGCCTGCAAAACAACGACATCCCAGT
genomic: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACAACGACATCCCAGT
EST: gi|15370691|gb|BI530117.1|BI530117
EST:     CGGCTGTGGCGGAACAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAG                         GGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
genomic: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
EST: gi|8576733|gb|BE129370.1|BE129370
EST:     CGGCTGTGGCGGAACAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAG                         GGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
genomic: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
EST: gi|15371058|gb|BI530484.1|BI530484
EST:     CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAG                         GGCCTGCAAAACATACGAACATCCCAGTCCAGATCGCCGTCATGGAGCTGA
genomic: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACA-ACG-ACATCCCAGTCCAGATCGCCGTCATGGAGCTGA
EST: gi|16433151|gb|BI998377.1|BI998377
EST:     TGCGGTCACTCAAGGAGGTGCAG                         GGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
genomic: TGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCGGCGGGACCAGCCATTCCCACACCCGAGGAGATTGAGGCGGCGGAGGCGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatcttgtatgtgtgttgtgaagcatgaggcgaagggaagcacaaaggccatgcgagcgatgcggtgtcacctggtgtgatgaccctcgctgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcgctgt