1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAGgtgagtccggttgcggggagaggggagggcgtgtgtgggacagtacaagtagtgttgcggcgtgtgctcgggagggaataatagacagtacaaggtgtgt...
species | Chlamydomonas reinhardtii |
transcript | EDP04327 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAG GAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCGEST: gi|15371461|gb|BI530887.1|BI530887
genomic: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAGgtgagtccgg ... attgccacagGAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCG
EST: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAG GAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCGEST: gi|8576734|gb|BE129371.1|BE129371
genomic: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAGgtgagtccgg ... attgccacagGAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCG
EST: CGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAG GAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCGEST: gi|15370692|gb|BI530118.1|BI530118
genomic: CGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAGgtgagtccgg ... attgccacagGAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCG
EST: CGGCGCTGTTNCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAG GAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCGCGCGGCEST: gi|14232668|gb|BG851484.1|BG851484
genomic: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAGgtgagtccgg ... attgccacagGAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCGCGCGGC
EST: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAG GAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCGEST: gi|15372911|gb|BI532337.1|BI532337
genomic: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAGgtgagtccgg ... attgccacagGAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCG
EST: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAG GAAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCGEST: gi|15697286|gb|BI721591.1|BI721591
genomic: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAGgtgagtccgg ... attgccacagGA-GGGTGTCAAGGACCCCGTCTATATCTACGGCAACCG
EST: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAG GAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCGEST: gi|14239028|gb|BG857844.1|BG857844
genomic: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAGgtgagtccgg ... attgccacagGAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCG
EST: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAG GAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCG
genomic: CGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAGgtgagtccgg ... attgccacagGAGGGTGTCAAGGACCCCGTCTATATCTACGGCAACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAGgtgagtccggttgcggggagaggggagggcgtgtgtgggacagtacaagtagtgttgcggcgtgtgctcgggagggaataatagacagtacaaggtgtgt
- - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggtgt