1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gccctctgccttcgcacgctagccgcctgaccagagccaggagcccaggacccagcccacacgccgctgtcgcttcgcctgtgtgctcgtgtgtttccagGTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAG
species | Chlamydomonas reinhardtii |
transcript | EDP04327 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAA GTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCGEST: gi|15371461|gb|BI530887.1|BI530887
genomic: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAAgtgagtggcg ... gtgtttccagGTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCG
EST: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAA GTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCGEST: gi|15370692|gb|BI530118.1|BI530118
genomic: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAAgtgagtggcg ... gtgtttccagGTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCG
EST: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAA GTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTNCGEST: gi|14232668|gb|BG851484.1|BG851484
genomic: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAAgtgagtggcg ... gtgtttccagGTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCG
EST: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAA GTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCGEST: gi|15372911|gb|BI532337.1|BI532337
genomic: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAAgtgagtggcg ... gtgtttccagGTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCG
EST: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAA GTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCGEST: gi|15371188|gb|BI533060.1|BI533060
genomic: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAAgtgagtggcg ... gtgtttccagGTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCG
EST: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAA GTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCGEST: gi|15697286|gb|BI721591.1|BI721591
genomic: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAAgtgagtggcg ... gtgtttccagGTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCG
EST: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAA GTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCGEST: gi|15372002|gb|BI531428.1|BI531428
genomic: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAAgtgagtggcg ... gtgtttccagGTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCG
EST: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAA GTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCAGCGCTEST: gi|14239028|gb|BG857844.1|BG857844
genomic: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAAgtgagtggcg ... gtgtttccagGTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCT
EST: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAA GTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCG
genomic: GTGTTCACGCTGGCTGACTCTTACTACCGCCTGACAAAGAAgtgagtggcg ... gtgtttccagGTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCG
caggacccagcccacacgccgctgtcgcttcgcctgtgtgctcgtgtgtttccagGTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAG
tgtttcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccctctgccttcgcacgctagccgcctgaccagagccaggagcccaggacccagcccacacgccgctgtcgcttcgcctgtgtgctcgtgtgtttccagGTACCTGCTGGAGGGCGTGGACTTTGAGAAGCTGCCGGCGGCGCTGTTCCGGGCGCCCTTCGCGCTGCTGGCACACAACAAGTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - cgcacgc
- - - - - - - - - - - - - - - - agagcca
- - - - - - - - - - - - - - - - - - - - - - - -ggaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgct