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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcgcgcggcgggccagggcggcgcgggaggcaacaatggatgccgcttgtgcgggctcggagcatcctgggagagcggacaggtcatcacgcgcgcccgcgtccgcacacggctgccacctctcgttgcctcatgtcacacacctcacgttcatgctgcagGCACCAAGATCGGCCAGGCGGCGGTGTTCAGTCAGTACGAGACCGAGGACGGCGTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04327
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16428672|gb|BI993898.1|BI993898
EST:     ACGCTGTTCAACTTGATTGACCGGAGCG                         GCACCAAGATCGGCCAGGCGGCGGTGTTCAGTCAGTACGAGACCGAGGACG
genomic: ACGCTGTTCAACTTGATTGACCGGAGCGgtgagtcgcg ... catgctgcagGCACCAAGATCGGCCAGGCGGCGGTGTTCAGTCAGTACGAGACCGAGGACG
EST: gi|8576734|gb|BE129371.1|BE129371
EST:     GACGTGACGCTGTTCAACTTGATTGACCGGAGCG                         GCACCAAGATCGGCCAGGCGGCGGTGTTCAGTCAGTACGAGACCGAGGACG
genomic: GACGTGACGCTGTTCAACTTGATTGACCGGAGCGgtgagtcgcg ... catgctgcagGCACCAAGATCGGCCAGGCGGCGGTGTTCAGTCAGTACGAGACCGAGGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacggctgccacctctcgttgcctcatgtcacacacctcacgttcatgctgcagGCACCAAGATCGGCCAGGCGGCGGTGTTCAGTCAGTACGAGACCGAGGACGGCGTGG
                                   acctcac  putative branch site (score: 3)