1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCGCCGTATCTGCATTCTCGCGGCCAAGAAGGGCGATAAGGGCGGCAAGGGCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAGgtgaggcgcgctcgcggccaggcacaatgtcgtaggtggcgtgtccagggatgccgcgtggacgccacgccacggcccagcagccacaccccggtcgccc...
species | Chlamydomonas reinhardtii |
transcript | EDP04327 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAG GAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTGEST: gi|15371461|gb|BI530887.1|BI530887
genomic: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAGgtgaggcgcg ... ggccccgtagGAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTG
EST: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAG GAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTGEST: gi|15370692|gb|BI530118.1|BI530118
genomic: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAGgtgaggcgcg ... ggccccgtagGAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTG
EST: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAG GAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTGEST: gi|14232668|gb|BG851484.1|BG851484
genomic: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAGgtgaggcgcg ... ggccccgtagGAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTG
EST: GCGGCTAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAG GAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTGEST: gi|15372911|gb|BI532337.1|BI532337
genomic: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAGgtgaggcgcg ... ggccccgtagGAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTG
EST: CGGCAAGGGGGCTAAGAAGTCGGCACTGGCGG-CNTTGCTGAAGAAGAAG GAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTGEST: gi|15371188|gb|BI533060.1|BI533060
genomic: CGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGAC-TTGCTGAAGAAGAAGgtgaggcgcg ... ggccccgtagGAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTG
EST: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAG GAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTGEST: gi|15697286|gb|BI721591.1|BI721591
genomic: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAGgtgaggcgcg ... ggccccgtagGAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTG
EST: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAG GAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTGEST: gi|15372002|gb|BI531428.1|BI531428
genomic: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAGgtgaggcgcg ... ggccccgtagGAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTG
EST: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAG GAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTGEST: gi|14239028|gb|BG857844.1|BG857844
genomic: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAGgtgaggcgcg ... ggccccgtagGAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTG
EST: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAG GAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTGEST: gi|8286591|gb|BE024150.1|BE024150
genomic: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAGgtgaggcgcg ... ggccccgtagGAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTG
EST: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAG GAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTG
genomic: GCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAGgtgaggcgcg ... ggccccgtagGAGGAGGCTACCGGCAGCGCCGCCGCCACTGAGGGCGCCAGCAATGCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCCGTATCTGCATTCTCGCGGCCAAGAAGGGCGATAAGGGCGGCAAGGGCGGCAAGGGGGCTAAGAAGTCGGCACTGGCGGACTTGCTGAAGAAGAAGgtgaggcgcgctcgcggccaggcacaatgtcgtaggtggcgtgtccagggatgccgcgtggacgccacgccacggcccagcagccacaccccggtcgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaccc