1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtacgtgcttaaatggacgcgtgtgccagtctaccgcaactatgctttgcatgtctgattgaaatgcccgcctgttattgcatgggtttggcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAGAAGCGGAAAGAGAAGCTGGCGGCGCTACAGAAGGCGCTGGATGACGCGC
species | Chlamydomonas reinhardtii |
transcript | EDP04327 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAG GGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAGEST: gi|16428672|gb|BI993898.1|BI993898
genomic: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
EST: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAG GGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAGEST: gi|8576734|gb|BE129371.1|BE129371
genomic: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
EST: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAG GGCCTGCAAAACAACGACATCCCAGTEST: gi|15370691|gb|BI530117.1|BI530117
genomic: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACAACGACATCCCAGT
EST: CGGCTGTGGCGGAACAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAG GGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAGEST: gi|8576733|gb|BE129370.1|BE129370
genomic: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
EST: CGGCTGTGGCGGAACAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAG GGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAGEST: gi|15371058|gb|BI530484.1|BI530484
genomic: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
EST: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAG GGCCTGCAAAACATACGAACATCCCAGTCCAGATCGCCGTCATGGAGCTGAEST: gi|16433151|gb|BI998377.1|BI998377
genomic: CGGCTGTGGCGGAGCAGGCAGCGCACGTGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACA-ACG-ACATCCCAGTCCAGATCGCCGTCATGGAGCTGA
EST: TGCGGTCACTCAAGGAGGTGCAG GGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
genomic: TGCGGTCACTCAAGGAGGTGCAGgtggggcatc ... gcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAG
tttgcatgtctgattgaaatgcccgcctgttattgcatgggtttggcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAGAAGCGGAAAGAGAAGCTGGCGGCGCTACAGAAGGCGCTGGATGACGCGC
gtctgat putative branch site (score: 4)
attgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgcttaaatggacgcgtgtgccagtctaccgcaactatgctttgcatgtctgattgaaatgcccgcctgttattgcatgggtttggcaattgcagGGCCTGCAAAACAACGACATCCCAGTCCAGATCGCCGTCATGGAGCTGAAGAAGCGGAAAGAGAAGCTGGCGGCGCTACAGAAGGCGCTGGATGACGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
gtacgtg
- - - - - - - - - -cgtgtgc
- - - - - - - - - - - - - - - - accgcaac
- - - - - - - - - - - - - - - - - - - - tatgctt
- - - - - - - - - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttt