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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgatgtgttagttcctctgcgggctgcgtgtcggcgtcctggtcagctctgtcacgtgtgcacacggtaaccctcctcaaggagtatgcagccgccagaagcaccacatgcgcatccttttgaccaggtgttatcgctgctccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTATCCATCTTGACGCCGGGGCTTGCTTTCACCGCCCTGGGGATGTGAGAGT

Basic information

species Chlamydomonas reinhardtii
transcript EDO98562
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161794603|gb|FC081985.1|FC081985
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|22056449|gb|BQ812338.1|BQ812338
EST:     AGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTT-ANTCCG                         GATCATGAAGAAGACCTCGCTCTTCTAA-CGACGCGGC
genomic: AGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCA-TCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGC
EST: gi|161820431|gb|FC106971.1|FC106971
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCTTCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161817509|gb|FC104153.1|FC104153
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTTTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161820089|gb|FC105810.1|FC105810
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|10126718|gb|BE725294.1|BE725294
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|22059430|gb|BQ813423.1|BQ813423
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161794602|gb|FC081984.1|FC081984
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161801415|gb|FC091213.1|FC091213
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|6545633|gb|AV391417.1|AV391417
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGT-CATCCG                         GATC-TGAAGAAGAC-TCGCTCTTCTAAA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAA
EST: gi|22075488|gb|BQ824264.1|BQ824264
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161821609|gb|FC108734.1|FC108734
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161792540|gb|FC081794.1|FC081794
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161804143|gb|FC092176.1|FC092176
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161811366|gb|FC097974.1|FC097974
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|22070983|gb|BQ820321.1|BQ820321
EST:     TCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: TCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161791783|gb|FC078353.1|FC078353
EST:     GAGGCGGACCGCAACGACGACNACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|10191305|gb|BE761381.1|BE761381
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|9210661|gb|BE337576.1|BE337576
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGNAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCT
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATG-AAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCT
EST: gi|161823500|gb|FC108500.1|FC108500
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|22059429|gb|BQ813422.1|BQ813422
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|8514195|gb|BE122090.1|BE122090
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTTTTTTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161798774|gb|FC082943.1|FC082943
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|22075489|gb|BQ824265.1|BQ824265
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161798389|gb|FC084365.1|FC084365
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161818971|gb|FC108839.1|FC108839
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161792539|gb|FC081793.1|FC081793
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|22056448|gb|BQ812337.1|BQ812337
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|10768099|gb|AV618924.1|AV618924
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGA
EST: gi|161812105|gb|FC098284.1|FC098284
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTTTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161817510|gb|FC104154.1|FC104154
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161798590|gb|FC084033.1|FC084033
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|9440766|gb|BE441265.1|BE441265
EST:     CGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTTTAAACGACGCGGCTGGACTGGGCCTA
genomic: CGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|22066253|gb|BQ816845.1|BQ816845
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161808681|gb|FC096778.1|FC096778
EST:     GAGGCGGACCGCAACGACGACCACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|22071254|gb|BQ820592.1|BQ820592
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCT
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCT
EST: gi|161809509|gb|FC096540.1|FC096540
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|15694485|gb|BI718790.1|BI718790
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|49460075|gb|BP087988.1|BP087988
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACT
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACT
EST: gi|161820432|gb|FC106972.1|FC106972
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161812106|gb|FC098285.1|FC098285
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161798589|gb|FC084032.1|FC084032
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|22055139|gb|BQ811689.1|BQ811689
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGGCTGGACTGGGCCT
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGC-GGCTGGACTGGGCCT
EST: gi|10126575|gb|BE725279.1|BE725279
EST:     ACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: ACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
EST: gi|161796559|gb|FC082382.1|FC082382
EST:     GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCG                         GATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA
genomic: GAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGgtgagtgatg ... tccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagaagcaccacatgcgcatccttttgaccaggtgttatcgctgctccccaacagGATCATGAAGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACTGGGCCTATCCATCTTGACGCCGGGGCTTGCTTTCACCGCCCTGGGGATGTGAGAGT
                      ttttgac  putative branch site (score: 3)
                                         ctgctcccc  putative PPT