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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgttagcctatatgaccttggggccgctcagcagattgaaattggaccaggcgccctctgtttgaacttcagcgcttgaacttgacccggtgcctgacttctatacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98562
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161794603|gb|FC081985.1|FC081985
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|22056449|gb|BQ812338.1|BQ812338
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161820089|gb|FC105810.1|FC105810
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|22055142|gb|BQ811690.1|BQ811690
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|22055465|gb|BQ811836.1|BQ811836
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|10126718|gb|BE725294.1|BE725294
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|22059430|gb|BQ813423.1|BQ813423
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|10781297|gb|AV637977.1|AV637977
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161801415|gb|FC091213.1|FC091213
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|6545633|gb|AV391417.1|AV391417
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|10773251|gb|AV624074.1|AV624074
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161821609|gb|FC108734.1|FC108734
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161792540|gb|FC081794.1|FC081794
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|10788791|gb|AV626511.1|AV626511
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|49464181|gb|BP092094.1|BP092094
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161804143|gb|FC092176.1|FC092176
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161811366|gb|FC097974.1|FC097974
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161791783|gb|FC078353.1|FC078353
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|10191305|gb|BE761381.1|BE761381
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|9210661|gb|BE337576.1|BE337576
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|10779525|gb|AV636205.1|AV636205
EST:     GTNGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161823500|gb|FC108500.1|FC108500
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|22070985|gb|BQ820323.1|BQ820323
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|22075489|gb|BQ824265.1|BQ824265
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161798389|gb|FC084365.1|FC084365
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161818971|gb|FC108839.1|FC108839
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|7709648|gb|AW773019.1|AW773019
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|10768099|gb|AV618924.1|AV618924
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161817510|gb|FC104154.1|FC104154
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|49462682|gb|BP090595.1|BP090595
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|22076609|gb|BQ825401.1|BQ825401
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|49461383|gb|BP089296.1|BP089296
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|22066253|gb|BQ816845.1|BQ816845
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161808681|gb|FC096778.1|FC096778
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|22071254|gb|BQ820592.1|BQ820592
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161809509|gb|FC096540.1|FC096540
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|15694485|gb|BI718790.1|BI718790
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|9441327|gb|BE441690.1|BE441690
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATACGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161815234|gb|FC101531.1|FC101531
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161820432|gb|FC106972.1|FC106972
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|22074117|gb|BQ823306.1|BQ823306
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
EST: gi|161796559|gb|FC082382.1|FC082382
EST:     GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCT                         CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
genomic: GTTGGCCTGACTGAGGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTgtaggtgtta ... atacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttgaacttcagcgcttgaacttgacccggtgcctgacttctatacatgcagCTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG
                                  gcctgac  putative branch site (score: 3)
                                        cttctat  CT-rich tract
                                         ttctata  TA-rich tract