1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agccagccttgggccagctcgcgctacagtgtacccgggctgtccctgcgccttctgcgctcaaacctgaccgctccgtcgctcgttttcgctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
species | Chlamydomonas reinhardtii |
transcript | EDO98562 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|22056449|gb|BQ812338.1|BQ812338
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161820089|gb|FC105810.1|FC105810
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|22055142|gb|BQ811690.1|BQ811690
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|22055465|gb|BQ811836.1|BQ811836
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|10126718|gb|BE725294.1|BE725294
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|22059430|gb|BQ813423.1|BQ813423
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|10781297|gb|AV637977.1|AV637977
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161801415|gb|FC091213.1|FC091213
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|6545633|gb|AV391417.1|AV391417
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|10773251|gb|AV624074.1|AV624074
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161821609|gb|FC108734.1|FC108734
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161792540|gb|FC081794.1|FC081794
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|10788791|gb|AV626511.1|AV626511
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|49464181|gb|BP092094.1|BP092094
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161804143|gb|FC092176.1|FC092176
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161811366|gb|FC097974.1|FC097974
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161791783|gb|FC078353.1|FC078353
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|10191305|gb|BE761381.1|BE761381
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|9210661|gb|BE337576.1|BE337576
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|10779525|gb|AV636205.1|AV636205
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161823500|gb|FC108500.1|FC108500
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|22070985|gb|BQ820323.1|BQ820323
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|22075489|gb|BQ824265.1|BQ824265
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161798389|gb|FC084365.1|FC084365
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161818971|gb|FC108839.1|FC108839
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|7709648|gb|AW773019.1|AW773019
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|10768099|gb|AV618924.1|AV618924
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161817510|gb|FC104154.1|FC104154
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|49462682|gb|BP090595.1|BP090595
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGCGCTTCGAGCCGAAGAAGGAGGAEST: gi|22076609|gb|BQ825401.1|BQ825401
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGG-GCTTCGAGCCGAAGAAGGAGGA
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|49461383|gb|BP089296.1|BP089296
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|22066253|gb|BQ816845.1|BQ816845
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161808681|gb|FC096778.1|FC096778
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|22071254|gb|BQ820592.1|BQ820592
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161809509|gb|FC096540.1|FC096540
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|15694485|gb|BI718790.1|BI718790
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|9441327|gb|BE441690.1|BE441690
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161815234|gb|FC101531.1|FC101531
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161820432|gb|FC106972.1|FC106972
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|22074117|gb|BQ823306.1|BQ823306
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAGEST: gi|161796559|gb|FC082382.1|FC082382
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
ctgcgccttctgcgctcaaacctgaccgctccgtcgctcgttttcgctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
acctgac putative branch site (score: 3)
ctcgttttcgctct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agccagccttgggccagctcgcgctacagtgtacccgggctgtccctgcgccttctgcgctcaaacctgaccgctccgtcgctcgttttcgctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctcaaa