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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgctcccgcggctttgagcctggccttcctccgcatccgtccagcgaaccgggaaccttccagcgcccagctttcgttctcagcaatgcagca...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98562
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161794603|gb|FC081985.1|FC081985
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|22056449|gb|BQ812338.1|BQ812338
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161820089|gb|FC105810.1|FC105810
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|22055142|gb|BQ811690.1|BQ811690
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|22055465|gb|BQ811836.1|BQ811836
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|10126718|gb|BE725294.1|BE725294
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|22059430|gb|BQ813423.1|BQ813423
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|10781297|gb|AV637977.1|AV637977
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161801415|gb|FC091213.1|FC091213
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|6545633|gb|AV391417.1|AV391417
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|10773251|gb|AV624074.1|AV624074
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161821609|gb|FC108734.1|FC108734
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161792540|gb|FC081794.1|FC081794
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|10788791|gb|AV626511.1|AV626511
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|49464181|gb|BP092094.1|BP092094
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161804143|gb|FC092176.1|FC092176
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161811366|gb|FC097974.1|FC097974
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161791783|gb|FC078353.1|FC078353
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|10191305|gb|BE761381.1|BE761381
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|9210661|gb|BE337576.1|BE337576
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|10779525|gb|AV636205.1|AV636205
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161823500|gb|FC108500.1|FC108500
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|22070985|gb|BQ820323.1|BQ820323
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|22075489|gb|BQ824265.1|BQ824265
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161798389|gb|FC084365.1|FC084365
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161818971|gb|FC108839.1|FC108839
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|7709648|gb|AW773019.1|AW773019
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|10768099|gb|AV618924.1|AV618924
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161817510|gb|FC104154.1|FC104154
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|49462682|gb|BP090595.1|BP090595
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGCGCTTCGAGCCGAAGAAGGAGGA
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGG-GCTTCGAGCCGAAGAAGGAGGA
EST: gi|22076609|gb|BQ825401.1|BQ825401
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|49461383|gb|BP089296.1|BP089296
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|22066253|gb|BQ816845.1|BQ816845
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161808681|gb|FC096778.1|FC096778
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|22071254|gb|BQ820592.1|BQ820592
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161809509|gb|FC096540.1|FC096540
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|15694485|gb|BI718790.1|BI718790
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|9441327|gb|BE441690.1|BE441690
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161815234|gb|FC101531.1|FC101531
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161820432|gb|FC106972.1|FC106972
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|22074117|gb|BQ823306.1|BQ823306
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
EST: gi|161796559|gb|FC082382.1|FC082382
EST:     CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAG                         GAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG
genomic: CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgc ... gctctaacagGAGCTGAAGGTGGCCATGCGTGCTCTGGGCTTCGAGCCGAAGAAGGAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCGATACCGATGGCAGCGGCACCATCGACGCCAAGgtacgcgcgctcccgcggctttgagcctggccttcctccgcatccgtccagcgaaccgggaaccttccagcgcccagctttcgttctcagcaatgcagca

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