1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GACACCAGCCCGGAGGAGCAGGCGCGCGGGATGGAGAAGACGGTGCATGAGCTGCTTGAGAAGAGCGCGGCGGACGCGGCTAAGAATGACATCAACTCGGgtgaggcgattggcagctgtccaggcgttgcagggcgttgggccgtgtggacgggcagccaaatgagatgggtgtgtgctgcggtgctgggcgcgaccag...
species | Chlamydomonas reinhardtii |
transcript | EDO98394 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTGCTTGAGAAGAGCGCGGCGGACGCGGCTAAGAATGACATCAACTCGG CCCTGGAGAACGCCATGGAGGCGAAGAAGAATGAGEST: gi|49465057|gb|BP092970.1|BP092970
genomic: GCTGCTTGAGAAGAGCGCGGCGGACGCGGCTAAGAATGACATCAACTCGGgtgaggcgat ... ccccccgcagCCCTGGAGAACGCCATGGAGGCGAAGAAGAATGAG
EST: GCTGCTTGAGAAGAGCGCGGCGGACGCGGCTAAGAATGACATCAACTCGG CCCTGGAGAACGCCATGGAGGCGAAGAAGAATGAGCGAAAGCTGTGCCGCT
genomic: GCTGCTTGAGAAGAGCGCGGCGGACGCGGCTAAGAATGACATCAACTCGGgtgaggcgat ... ccccccgcagCCCTGGAGAACGCCATGGAGGCGAAGAAGAATGAGCGAAAGCTGTGCCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACACCAGCCCGGAGGAGCAGGCGCGCGGGATGGAGAAGACGGTGCATGAGCTGCTTGAGAAGAGCGCGGCGGACGCGGCTAAGAATGACATCAACTCGGgtgaggcgattggcagctgtccaggcgttgcagggcgttgggccgtgtggacgggcagccaaatgagatgggtgtgtgctgcggtgctgggcgcgaccag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgc