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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCGGGTGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatcagggcctcgcggttgccgcagcggtcacagcggttgcttccttggttgcttcgctggggcaagtgggcacggcctcactgcttcgggctgctgatccggaaccttctcccacacgctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98394
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49465682|gb|BP093595.1|BP093595
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCAC
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCAC
EST: gi|10794443|gb|AV631809.1|AV631809
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|15700353|gb|BI724658.1|BI724658
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|49470498|gb|BP098359.1|BP098359
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|49465057|gb|BP092970.1|BP092970
EST:     CGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: CGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|49465529|gb|BP093442.1|BP093442
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|49470394|gb|BP098255.1|BP098255
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|6549792|gb|AV395576.1|AV395576
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|10788299|gb|AV626019.1|AV626019
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|10791160|gb|AV628526.1|AV628526
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|10791280|gb|AV628646.1|AV628646
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|10787805|gb|AV644477.1|AV644477
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|49470989|gb|BP098850.1|BP098850
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTCGGGTGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatcagggcctcgcggttgccgcagcggtcacagcggttgcttccttggttgcttcgctggggcaagtgggcacggcctcactgcttcgggctgctgatccggaaccttctcccacacgctgcag

- - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - -  CTCCTC