1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGGGCGACTTCAAGAACGCGGTCAAGTGGTTTGAGCTGCTCACCTCGCTGGTCAGCAACGACCCCGGCGTGCTGGCGCGACTGGGAGCCATCCACGCCAGgtgggtcacggccaggcatcgccgcggggacggggccactggccggtgccagcctacatgctggcgtgcatgctggcgcgccaaccgcacactggcaaaa...
species | Chlamydomonas reinhardtii |
transcript | EDO98394 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GTCAGCAACGACCCCGGCGTGCTGGCGCGACTGGGAGCCATCCACGCCAG GTTCGACGACGAGGCCAAGGCGCTGCACTACTACCAGGAGTCGCACCGCGTEST: gi|16434263|gb|BI999489.1|BI999489
genomic: GTCAGCAACGACCCCGGCGTGCTGGCGCGACTGGGAGCCATCCACGCCAGgtgggtcacg ... cgccgcgcagGTTCGACGACGAGGCCAAGGCGCTGCACTACTACCAGGAGTCGCACCGCGT
EST: GTCAGCAACGACCCCGGCGTGCTGGCGCGACTGGGAGCCATCCACGCCAG GTTCGACGACGAGGCCAAGGCGCTGCACTACTACCAGGAGTCGCACCGCGTEST: gi|15703964|gb|BI728269.1|BI728269
genomic: GTCAGCAACGACCCCGGCGTGCTGGCGCGACTGGGAGCCATCCACGCCAGgtgggtcacg ... cgccgcgcagGTTCGACGACGAGGCCAAGGCGCTGCACTACTACCAGGAGTCGCACCGCGT
EST: GTCAGCAACGACCCCGGCGTGCTGGCGCGACTGGGAGCCATCCACGCCAG GTTCGACGACGAGGCCAAGGCGCTGCACTACTACCAGGAGTCGCACCGCGTEST: gi|16436500|gb|BM001720.1|BM001720
genomic: GTCAGCAACGACCCCGGCGTGCTGGCGCGACTGGGAGCCATCCACGCCAGgtgggtcacg ... cgccgcgcagGTTCGACGACGAGGCCAAGGCGCTGCACTACTACCAGGAGTCGCACCGCGT
EST: GTCAGCAACGACCCCGGCGTGCTGGCGCGACTGGGAGCCATCCACGCCAG GTTCGACGACGAGGCCAAGGCGCTGCACTACTACCAGGAGTCGCACCGCGT
genomic: GTCAGCAACGACCCCGGCGTGCTGGCGCGACTGGGAGCCATCCACGCCAGgtgggtcacg ... cgccgcgcagGTTCGACGACGAGGCCAAGGCGCTGCACTACTACCAGGAGTCGCACCGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGCGACTTCAAGAACGCGGTCAAGTGGTTTGAGCTGCTCACCTCGCTGGTCAGCAACGACCCCGGCGTGCTGGCGCGACTGGGAGCCATCCACGCCAGgtgggtcacggccaggcatcgccgcggggacggggccactggccggtgccagcctacatgctggcgtgcatgctggcgcgccaaccgcacactggcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcacac