Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtatcagggcctcgcggttgccgcagcggtcacagcggttgcttccttggttgcttcgctggggcaagtgggcacggcctcactgcttcgggctgctgatccggaaccttctcccacacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGGCTATGCGGGGCGGCACGGCGATGCAGCAGGACCCCAGCCTGGCGCGGCC

Basic information

species Chlamydomonas reinhardtii
transcript EDO98394
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49465682|gb|BP093595.1|BP093595
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCAC
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCAC
EST: gi|10794443|gb|AV631809.1|AV631809
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|15700353|gb|BI724658.1|BI724658
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|49470498|gb|BP098359.1|BP098359
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|49465057|gb|BP092970.1|BP092970
EST:     CGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: CGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|49465529|gb|BP093442.1|BP093442
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|49470394|gb|BP098255.1|BP098255
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|6549792|gb|AV395576.1|AV395576
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|10788299|gb|AV626019.1|AV626019
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|10791160|gb|AV628526.1|AV628526
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|10791280|gb|AV628646.1|AV628646
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|10787805|gb|AV644477.1|AV644477
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
EST: gi|49470989|gb|BP098850.1|BP098850
EST:     TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCG                         CCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG
genomic: TGGTGCCGCATTTAAGGCACTTGGGGCCGATGGAGCTCCTCCAGGCACCGgtgggtatca ... cacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacggcctcactgcttcgggctgctgatccggaaccttctcccacacgctgcagCCATGATGGGGCCGCCTGGCACGGCCATGAAGAGCTTCGTGCCAGGCACGGCTATGCGGGGCGGCACGGCGATGCAGCAGGACCCCAGCCTGGCGCGGCC
                      tgctgat  putative branch site (score: 3)
                                   ccttctcccac  putative PPT