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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATGGTCACGCGCAAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggtagcggtggctgaggaagtgggggagcagttgccggaggggagcacaaaccgaagatggtggttttgggcgcagcgcatgtggacgtgcttg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97077
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10127601|gb|BE726305.1|BE726305
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|34981108|gb|CF555025.1|CF555025
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|7426921|gb|AW661094.1|AW661094
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|14238469|gb|BG857285.1|BG857285
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|34983064|gb|CF556981.1|CF556981
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|15696153|gb|BI720458.1|BI720458
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|10780539|gb|AV637219.1|AV637219
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTG
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTG
EST: gi|10774609|gb|AV625432.1|AV625432
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|10777950|gb|AV634630.1|AV634630
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|10778230|gb|AV634910.1|AV634910
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|16432240|gb|BI997466.1|BI997466
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|23366445|gb|BU654265.1|BU654265
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|10768987|gb|AV619812.1|AV619812
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCC
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCC
EST: gi|34982844|gb|CF556761.1|CF556761
EST:     AAGGAGGCCCTGCGTGCCCAGGCGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|10771558|gb|AV622381.1|AV622381
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|49463184|gb|BP091097.1|BP091097
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|15372567|gb|BI531993.1|BI531993
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|14229609|gb|BG848441.1|BG848441
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
EST: gi|34981107|gb|CF555024.1|CF555024
EST:     AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGA                         GGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT
genomic: AAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggta ... acctccgcagGGGCCAGAACGAGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATGGTCACGCGCAAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAgtgagtggtagcggtggctgaggaagtgggggagcagttgccggaggggagcacaaaccgaagatggtggttttgggcgcagcgcatgtggacgtgcttg

- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgctt