1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctccgcctcgccctttcgcattgggtccggtagagtttgcgctggtatcctcaaccgcccgcctcgccccctcttttgcctgtcctcttcacgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATGGTCACGCGCAAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGC
species | Chlamydomonas reinhardtii |
transcript | EDO97077 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|34981108|gb|CF555025.1|CF555025
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|7426921|gb|AW661094.1|AW661094
genomic: GCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|14238469|gb|BG857285.1|BG857285
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|34983064|gb|CF556981.1|CF556981
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|49458354|gb|BP086267.1|BP086267
genomic: GCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|15696153|gb|BI720458.1|BI720458
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|10780539|gb|AV637219.1|AV637219
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|10774609|gb|AV625432.1|AV625432
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|10777950|gb|AV634630.1|AV634630
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|10778230|gb|AV634910.1|AV634910
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|16432240|gb|BI997466.1|BI997466
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|23366445|gb|BU654265.1|BU654265
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|10768987|gb|AV619812.1|AV619812
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|10771558|gb|AV622381.1|AV622381
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|49463184|gb|BP091097.1|BP091097
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|15372567|gb|BI531993.1|BI531993
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|14229609|gb|BG848441.1|BG848441
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATEST: gi|34981107|gb|CF555024.1|CF555024
genomic: GTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
EST: GCCCCGTGTGCAACGCCCCCAAGCGCCG CTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
genomic: GCCCCGTGTGCAACGCCCCCAAGCGCCGgtaagcttgg ... acgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCAT
tatcctcaaccgcccgcctcgccccctcttttgcctgtcctcttcacgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATGGTCACGCGCAAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGC
cccgcctcgccccctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccgcctcgccctttcgcattgggtccggtagagtttgcgctggtatcctcaaccgcccgcctcgccccctcttttgcctgtcctcttcacgcccgcagCTTCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATGGTCACGCGCAAGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - gagtttg
- - - - - - - - - - - - - - - - - - - - - - - atcctca